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Aliases for LOC105376878 Gene

Subcategory (RNA class) for LOC105376878 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105376878 Gene

  • Uncharacterized LOC105376878 3
  • AL445471.1 5

External Ids for LOC105376878 Gene

Previous GeneCards Identifiers for LOC105376878 Gene

  • GC01U904790

Summaries for LOC105376878 Gene

GeneCards Summary for LOC105376878 Gene

LOC105376878 (Uncharacterized LOC105376878) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376878 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376878 Gene

Genomics for LOC105376878 Gene

GeneHancer (GH) Regulatory Elements for LOC105376878 Gene

Promoters and enhancers for LOC105376878 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I025020 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.6 +90.2 90181 4.9 HDGF PKNOX1 SMAD1 ZFP64 YBX1 IRF4 GLIS2 ARID2 ZNF207 ZNF143 MIR4425 RUNX3 LOC105376878 RSRP1 SYF2 SRRM1 GC01M024955
GH01I025030 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12 +101.0 101046 6.2 HDGF PKNOX1 SMAD1 FEZF1 YBX1 GLI4 IRF4 ZNF207 ATF7 RUNX3 SRRM1 MAN1C1 RUNX3 SYF2 LOC105376878 ENSG00000261349 STMN1 RSRP1 SDHDP6 LOC105376879
GH01I025028 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +96.6 96623 0.9 HDGF PKNOX1 SMAD1 RB1 BACH1 EBF1 YBX1 BATF POLR2A SCRT2 RUNX3 LOC105376878 MAN1C1 RSRP1 SYF2 MIR4425 LOC105376879
GH01I025098 Enhancer 0.9 Ensembl ENCODE 12.1 +167.4 167379 2.4 HDGF CTCF ELF3 PKNOX1 SAP130 MAX EBF1 ZFHX2 POLR2A ATF7 RUNX3 LOC105376878 SELENON ENSG00000233755 LOC105376879
GH01I025101 Enhancer 0.9 ENCODE 12.1 +169.1 169083 0.2 ARNT FEZF1 ZNF2 IRF4 ZNF766 E2F8 ZNF143 RUNX3 DEK RXRA RUNX3 LOC105376878 ENSG00000233755 LOC105376879
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105376878 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376878 Gene

Genomic Locations for LOC105376878 Gene
chr1:24,932,512-24,964,506
(GRCh38/hg38)
Size:
31,995 bases
Orientation:
Plus strand
chr1:25,287,836-25,289,588
(GRCh37/hg19)

Genomic View for LOC105376878 Gene

Genes around LOC105376878 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376878 Gene

Proteins for LOC105376878 Gene

Post-translational modifications for LOC105376878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376878 Gene

Domains & Families for LOC105376878 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376878 Gene

Function for LOC105376878 Gene

Phenotypes From GWAS Catalog for LOC105376878 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376878 Gene

Localization for LOC105376878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376878 Gene

Pathways & Interactions for LOC105376878 Gene

SuperPathways for LOC105376878 Gene

No Data Available

Interacting Proteins for LOC105376878 Gene

Gene Ontology (GO) - Biological Process for LOC105376878 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376878 Gene

Drugs & Compounds for LOC105376878 Gene

No Compound Related Data Available

Transcripts for LOC105376878 Gene

mRNA/cDNA for LOC105376878 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376878 Gene

No ASD Table

Relevant External Links for LOC105376878 Gene

GeneLoc Exon Structure for
LOC105376878

Expression for LOC105376878 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376878 Gene

Orthologs for LOC105376878 Gene

Evolution for LOC105376878 Gene

ENSEMBL:
Gene Tree for LOC105376878 (if available)
TreeFam:
Gene Tree for LOC105376878 (if available)

No data available for Orthologs for LOC105376878 Gene

Paralogs for LOC105376878 Gene

No data available for Paralogs for LOC105376878 Gene

Variants for LOC105376878 Gene

Sequence variations from dbSNP and Humsavar for LOC105376878 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000081063 -- 24,956,278(+) T/C intron_variant
rs1000295993 -- 24,945,474(+) C/T genic_upstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000302882 -- 24,940,645(+) G/T genic_upstream_transcript_variant, intron_variant
rs1000334148 -- 24,939,420(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000402915 -- 24,939,630(+) C/T genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376878 Gene

Disorders for LOC105376878 Gene

No disorders were found for LOC105376878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376878 Gene

Publications for LOC105376878 Gene

No publications were found for LOC105376878 Gene.

Products for LOC105376878 Gene

Sources for LOC105376878 Gene

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