Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105376850 Gene

Subcategory (RNA class) for LOC105376850 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376850 Gene

  • Uncharacterized LOC105376850 3

External Ids for LOC105376850 Gene

Previous GeneCards Identifiers for LOC105376850 Gene

  • GC01U904228

Summaries for LOC105376850 Gene

GeneCards Summary for LOC105376850 Gene

LOC105376850 (Uncharacterized LOC105376850) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376850 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376850 Gene

Genomics for LOC105376850 Gene

GeneHancer (GH) Regulatory Elements for LOC105376850 Gene

Promoters and enhancers for LOC105376850 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J022162 Enhancer 0.6 dbSUPER 600.7 -0.2 -174 1.5 GMEB1 IKZF1 ATF1 PKNOX1 CTBP1 NFE2 POLR2A ZBTB2 NFIC CREM LOC105376850 LINC00339 LINC01635 WNT4
GH01J022177 Enhancer 0.7 FANTOM5 0.4 +14.2 14172 0.2 RELA CREM IKZF1 IKZF2 PKNOX1 DPF2 EED RUNX3 NR2F1 JUNB LOC105376850 MIR4418
GH01J022184 Enhancer 0.7 Ensembl 0.3 +21.9 21917 1 RFX1 ATF7 ZNF629 CEBPB SCRT2 EED BMI1 ATF2 CREB1 IKZF1 LINC00339 LOC105376850 MIR4418
GH01J022206 Enhancer 0.9 Ensembl dbSUPER 0.3 +46.0 46017 8 SP1 ZNF121 RNF2 PRDM10 REST CTCF ZNF24 ZNF341 EZH2 MTA3 WNT4 NBPF2P LINC00339 LOC105376850 MIR4418
GH01J022229 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +65.9 65917 1.8 PRDM1 ZNF341 SP1 BCOR FOSL2 ZNF768 CEBPB ZMYM3 HLF SMARCA5 MIR4418 LOC105376850
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376850 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376850 Gene

Genomic Locations for LOC105376850 Gene
chr1:22,163,384-22,172,505
(GRCh38/hg38)
Size:
9,122 bases
Orientation:
Plus strand

Genomic View for LOC105376850 Gene

Genes around LOC105376850 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376850 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376850 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376850 Gene

Proteins for LOC105376850 Gene

Post-translational modifications for LOC105376850 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376850 Gene

Domains & Families for LOC105376850 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376850 Gene

Function for LOC105376850 Gene

Phenotypes From GWAS Catalog for LOC105376850 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376850 Gene

Localization for LOC105376850 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376850 Gene

Pathways & Interactions for LOC105376850 Gene

PathCards logo

SuperPathways for LOC105376850 Gene

No Data Available

Interacting Proteins for LOC105376850 Gene

Gene Ontology (GO) - Biological Process for LOC105376850 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376850 Gene

Drugs & Compounds for LOC105376850 Gene

No Compound Related Data Available

Transcripts for LOC105376850 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376850 Gene

No ASD Table

Relevant External Links for LOC105376850 Gene

GeneLoc Exon Structure for
LOC105376850

No data available for mRNA/cDNA for LOC105376850 Gene

Expression for LOC105376850 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376850 Gene

Orthologs for LOC105376850 Gene

No data available for Orthologs and Evolution for LOC105376850 Gene

Paralogs for LOC105376850 Gene

No data available for Paralogs for LOC105376850 Gene

Variants for LOC105376850 Gene

Sequence variations from dbSNP and Humsavar for LOC105376850 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000055870 -- 22,164,972(+) A/G intron_variant
rs1000085740 -- 22,159,616(+) G/A upstream_transcript_variant
rs1000119964 -- 22,159,420(+) A/G upstream_transcript_variant
rs1000367759 -- 22,164,526(+) C/G intron_variant
rs1000422262 -- 22,170,956(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376850 Gene

Disorders for LOC105376850 Gene

No disorders were found for LOC105376850 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376850 Gene

Publications for LOC105376850 Gene

No publications were found for LOC105376850 Gene.

No data available for External Links for LOC105376850 Gene

Products for LOC105376850 Gene

Sources for LOC105376850 Gene

Content
Loading form....