Aliases for LOC105376778 Gene

Subcategory (RNA class) for LOC105376778 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376778 Gene

  • Uncharacterized LOC105376778 3

External Ids for LOC105376778 Gene

Previous GeneCards Identifiers for LOC105376778 Gene

  • GC16U901894

Summaries for LOC105376778 Gene

GeneCards Summary for LOC105376778 Gene

LOC105376778 (Uncharacterized LOC105376778) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376778 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376778 Gene

Genomics for LOC105376778 Gene

GeneHancer (GH) Regulatory Elements for LOC105376778 Gene

Promoters and enhancers for LOC105376778 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J086050 Enhancer 0.9 Ensembl CraniofacialAtlas 750.6 +1.8 1796 1.1 BCL6B SP7 PKNOX1 ZIC2 PRDM10 ZEB2 ZNF629 PATZ1 ZNF692 ZNF561 LOC105371389 LOC105376778 lnc-EMC8-2 lnc-IRF8-7 IRF8
GH16J086048 Enhancer 0.5 Ensembl 750.6 -1.0 -954 1 PKNOX1 ZIC2 POLR2A SIN3A CTCF LOC105371389 LOC105376778 lnc-EMC8-2 ENSG00000279604
GH16J086047 Enhancer 0.3 Ensembl 750.6 -2.0 -1954 0.2 LCORL ZNF398 LOC105371389 LOC105376778 lnc-EMC8-2 ENSG00000279604
GH16J086059 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 +12.0 12043 4.2 MTA3 IKZF1 NR2F2 ZFHX2 piR-35674-202 lnc-IRF8-7 piR-50408-008 LOC105376778
GH16J086056 Enhancer 0.2 Ensembl 0.4 +7.0 7046 0.2 piR-35674-202 lnc-IRF8-7 LOC105376778
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376778 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376778 Gene

Genomic Locations for LOC105376778 Gene
chr16:86,049,455-86,060,206
(GRCh38/hg38)
Size:
10,752 bases
Orientation:
Plus strand

Genomic View for LOC105376778 Gene

Genes around LOC105376778 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376778 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376778 Gene

Proteins for LOC105376778 Gene

Post-translational modifications for LOC105376778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376778 Gene

Domains & Families for LOC105376778 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376778 Gene

Function for LOC105376778 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376778 Gene

Localization for LOC105376778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376778 Gene

Pathways & Interactions for LOC105376778 Gene

PathCards logo

SuperPathways for LOC105376778 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376778 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376778 Gene

Drugs & Compounds for LOC105376778 Gene

No Compound Related Data Available

Transcripts for LOC105376778 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376778 Gene

No ASD Table

Relevant External Links for LOC105376778 Gene

GeneLoc Exon Structure for
LOC105376778

No data available for mRNA/cDNA for LOC105376778 Gene

Expression for LOC105376778 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376778 Gene

Orthologs for LOC105376778 Gene

No data available for Orthologs and Evolution for LOC105376778 Gene

Paralogs for LOC105376778 Gene

No data available for Paralogs for LOC105376778 Gene

Variants for LOC105376778 Gene

Sequence variations from dbSNP and Humsavar for LOC105376778 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000461819 -- 86,048,835(+) C/T upstream_transcript_variant
rs1000726406 -- 86,047,743(+) G/T upstream_transcript_variant
rs1000800042 -- 86,047,996(+) C/A upstream_transcript_variant
rs1000902678 -- 86,051,810(+) C/T intron_variant
rs1001021561 -- 86,056,946(+) T/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376778 Gene

Disorders for LOC105376778 Gene

No disorders were found for LOC105376778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376778 Gene

Publications for LOC105376778 Gene

No publications were found for LOC105376778 Gene.

No data available for External Links for LOC105376778 Gene

Products for LOC105376778 Gene

Sources for LOC105376778 Gene