Aliases for LOC105376717 Gene

Subcategory (RNA class) for LOC105376717 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376717 Gene

  • Uncharacterized LOC105376717 3

External Ids for LOC105376717 Gene

Previous GeneCards Identifiers for LOC105376717 Gene

  • GC01U904583

Summaries for LOC105376717 Gene

GeneCards Summary for LOC105376717 Gene

LOC105376717 (Uncharacterized LOC105376717) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376717 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376717 Gene

Genomics for LOC105376717 Gene

GeneHancer (GH) Regulatory Elements for LOC105376717 Gene

Promoters and enhancers for LOC105376717 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009847 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 750.6 -1.2 -1184 3.6 SP1 ZIC2 ZSCAN4 RFX1 ZNF316 ZSCAN5C NFIC NRF1 VEZF1 PRDM10 ENSG00000223989 LOC105376717 CTNNBIP1 LZIC
GH01J009851 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 750.6 +1.6 1604 1.3 HLF SP7 PRDM1 ZIC2 PRDM10 CEBPB ZNF629 ZBTB48 ZNF10 OSR2 LOC105376717 lnc-CLSTN1-1 KIF1B CLSTN1 piR-57133-004 CTNNBIP1
GH01J009853 Enhancer 0.4 dbSUPER 0.6 +2.6 2625 0.2 ZIC2 ZFHX2 GLIS1 lnc-CLSTN1-1 LOC105376717 piR-57133-004 CTNNBIP1
GH01J009854 Enhancer 0.2 Ensembl 0.6 +4.6 4617 1.2 NMNAT1 LOC105376717 lnc-CLSTN1-1 piR-57133-004 CTNNBIP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376717 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376717 Gene

Genomic Locations for LOC105376717 Gene
chr1:9,850,784-9,855,490
(GRCh38/hg38)
Size:
4,707 bases
Orientation:
Plus strand

Genomic View for LOC105376717 Gene

Genes around LOC105376717 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376717 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376717 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376717 Gene

Proteins for LOC105376717 Gene

Post-translational modifications for LOC105376717 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376717 Gene

Domains & Families for LOC105376717 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376717 Gene

Function for LOC105376717 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376717 Gene

Localization for LOC105376717 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376717 Gene

Pathways & Interactions for LOC105376717 Gene

PathCards logo

SuperPathways for LOC105376717 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376717 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376717 Gene

Drugs & Compounds for LOC105376717 Gene

No Compound Related Data Available

Transcripts for LOC105376717 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376717 Gene

No ASD Table

Relevant External Links for LOC105376717 Gene

GeneLoc Exon Structure for
LOC105376717

No data available for mRNA/cDNA for LOC105376717 Gene

Expression for LOC105376717 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376717 Gene

Orthologs for LOC105376717 Gene

No data available for Orthologs and Evolution for LOC105376717 Gene

Paralogs for LOC105376717 Gene

No data available for Paralogs for LOC105376717 Gene

Variants for LOC105376717 Gene

Sequence variations from dbSNP and Humsavar for LOC105376717 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000377762 -- 9,849,729(+) C/T upstream_transcript_variant
rs1000445626 -- 9,855,341(+) C/T non_coding_transcript_variant
rs1000981192 -- 9,850,910(+) CC/C non_coding_transcript_variant
rs1001062304 -- 9,854,279(+) A/C intron_variant
rs1001470446 -- 9,852,027(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376717 Gene

Disorders for LOC105376717 Gene

No disorders were found for LOC105376717 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376717 Gene

Publications for LOC105376717 Gene

No publications were found for LOC105376717 Gene.

No data available for External Links for LOC105376717 Gene

Products for LOC105376717 Gene

Sources for LOC105376717 Gene