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Aliases for LOC105376580 Gene

Subcategory (RNA class) for LOC105376580 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105376580 Gene

  • Uncharacterized LOC105376580 3
  • AC009652.1 5

External Ids for LOC105376580 Gene

Previous GeneCards Identifiers for LOC105376580 Gene

  • GC11U902674

Summaries for LOC105376580 Gene

GeneCards Summary for LOC105376580 Gene

LOC105376580 (Uncharacterized LOC105376580) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376580 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376580 Gene

Genomics for LOC105376580 Gene

GeneHancer (GH) Regulatory Elements for LOC105376580 Gene

Promoters and enhancers for LOC105376580 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I019236 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 6.8 -56.5 -56454 9.1 PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A DMAP1 YY1 E2F8 FOS SP3 E2F8 SPTY2D1 ENSG00000256361 ENSG00000256588 TSG101 ZDHHC13 LOC105376580 CSRP3 ENSG00000255308
GH11I019276 Enhancer 0.7 ENCODE 6 -19.8 -19790 2.6 NCOA3 ESRRA JUN MAX NEUROD1 CEBPG CTBP1 GATA3 RCOR1 FOS NAV2 LOC105376580 PCNAP4 ENSG00000255308
GH11I019260 Enhancer 0.6 Ensembl 5.8 -37.1 -37073 0.2 CTCF ZNF654 MYNN CREB1 ZNF143 TRIM22 REST RAD21 LOC105376580 PCNAP4 E2F8 ENSG00000255308
GH11I019228 Enhancer 0.5 ENCODE dbSUPER 4.7 -67.5 -67516 2.5 POLR2A LOC105376580 E2F8 CSRP3 ENSG00000255308
GH11I019279 Enhancer 0.3 ENCODE 0.4 -17.5 -17505 0.2 CTCF NAV2 PCNAP4 LOC105376580 ENSG00000255308
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105376580 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376580 Gene

Genomic Locations for LOC105376580 Gene
chr11:19,297,174-19,310,713
(GRCh38/hg38)
Size:
13,540 bases
Orientation:
Plus strand
chr11:19,321,430-19,329,905
(GRCh37/hg19)

Genomic View for LOC105376580 Gene

Genes around LOC105376580 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376580 Gene

Proteins for LOC105376580 Gene

Post-translational modifications for LOC105376580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376580 Gene

Domains & Families for LOC105376580 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376580 Gene

Function for LOC105376580 Gene

Phenotypes From GWAS Catalog for LOC105376580 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376580 Gene

Localization for LOC105376580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376580 Gene

Pathways & Interactions for LOC105376580 Gene

SuperPathways for LOC105376580 Gene

No Data Available

Interacting Proteins for LOC105376580 Gene

Gene Ontology (GO) - Biological Process for LOC105376580 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376580 Gene

Drugs & Compounds for LOC105376580 Gene

No Compound Related Data Available

Transcripts for LOC105376580 Gene

mRNA/cDNA for LOC105376580 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376580 Gene

No ASD Table

Relevant External Links for LOC105376580 Gene

GeneLoc Exon Structure for
LOC105376580

Expression for LOC105376580 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376580 Gene

Orthologs for LOC105376580 Gene

Evolution for LOC105376580 Gene

ENSEMBL:
Gene Tree for LOC105376580 (if available)
TreeFam:
Gene Tree for LOC105376580 (if available)

No data available for Orthologs for LOC105376580 Gene

Paralogs for LOC105376580 Gene

No data available for Paralogs for LOC105376580 Gene

Variants for LOC105376580 Gene

Sequence variations from dbSNP and Humsavar for LOC105376580 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1014386066 uncertain-significance, Hypertrophic cardiomyopathy, Dilated Cardiomyopathy, Dominant 19,210,490(+) T/C genic_upstream_transcript_variant, intron_variant
rs112672382 uncertain-significance, Dilated Cardiomyopathy, Dominant, Hypertrophic cardiomyopathy 19,210,495(+) T/C genic_upstream_transcript_variant, intron_variant
rs138573509 uncertain-significance, Dilated Cardiomyopathy, Dominant, Hypertrophic cardiomyopathy 19,210,493(+) C/ genic_upstream_transcript_variant, intron_variant
rs34865888 uncertain-significance, Hypertrophic cardiomyopathy, Dilated Cardiomyopathy, Dominant 19,210,494(+) TTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTT genic_upstream_transcript_variant, intron_variant
rs45498797 benign, uncertain-significance, not specified, Hypertrophic cardiomyopathy, Dilated Cardiomyopathy, Dominant 19,201,999(+) T/G genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376580 Gene

Disorders for LOC105376580 Gene

No disorders were found for LOC105376580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376580 Gene

Publications for LOC105376580 Gene

No publications were found for LOC105376580 Gene.

Products for LOC105376580 Gene

Sources for LOC105376580 Gene

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