Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105376556 Gene

Subcategory (RNA class) for LOC105376556 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376556 Gene

  • Uncharacterized LOC105376556 3

External Ids for LOC105376556 Gene

Previous GeneCards Identifiers for LOC105376556 Gene

  • GC11U902585

Summaries for LOC105376556 Gene

GeneCards Summary for LOC105376556 Gene

LOC105376556 (Uncharacterized LOC105376556) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376556 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376556 Gene

Genomics for LOC105376556 Gene

GeneHancer (GH) Regulatory Elements for LOC105376556 Gene

Promoters and enhancers for LOC105376556 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012618 Enhancer 0.2 ENCODE 600.7 -0.4 -393 0.2 LOC105376556 TEAD1 GC11P012566
GH11J012625 Enhancer 0.9 Ensembl ENCODE 0.4 +6.7 6669 1.7 BACH1 MAFK TRIM24 SMARCA4 DPF2 RFX1 NFE2L2 ATF1 ZNF24 ZNF316 LOC105376556 GC11M012658
GH11J012599 Enhancer 1.1 Ensembl ENCODE 0.3 -20.2 -20201 1.8 CC2D1A ELF3 CTCF MNT CEBPG RERE AHR ZNF24 TFE3 SP1 TEAD1 ENSG00000254688 LOC105376556 GC11P012566
GH11J012641 Enhancer 0.8 Ensembl ENCODE 0.3 +22.9 22896 1.6 EGR1 SOX13 TCF7 ZFHX2 BCL6 SMAD4 DMAP1 NR2F6 TEAD3 HLF TEAD1 ENSG00000254688 ENSG00000252329 GC11M012658 LOC105376556
GH11J012600 Enhancer 0.7 Ensembl ENCODE 0.4 -18.2 -18167 0.7 SP1 RXRA RAD21 HNF4A HNF4G LOC105376556 GC11P012566
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376556 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376556 Gene

Genomic Locations for LOC105376556 Gene
chr11:12,619,302-12,669,097
(GRCh38/hg38)
Size:
49,796 bases
Orientation:
Plus strand

Genomic View for LOC105376556 Gene

Genes around LOC105376556 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376556 Gene

Proteins for LOC105376556 Gene

Post-translational modifications for LOC105376556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376556 Gene

Domains & Families for LOC105376556 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376556 Gene

Function for LOC105376556 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376556 Gene

Localization for LOC105376556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376556 Gene

Pathways & Interactions for LOC105376556 Gene

PathCards logo

SuperPathways for LOC105376556 Gene

No Data Available

Interacting Proteins for LOC105376556 Gene

Gene Ontology (GO) - Biological Process for LOC105376556 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376556 Gene

Drugs & Compounds for LOC105376556 Gene

No Compound Related Data Available

Transcripts for LOC105376556 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376556 Gene

No ASD Table

Relevant External Links for LOC105376556 Gene

GeneLoc Exon Structure for
LOC105376556

No data available for mRNA/cDNA for LOC105376556 Gene

Expression for LOC105376556 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376556 Gene

Orthologs for LOC105376556 Gene

No data available for Orthologs and Evolution for LOC105376556 Gene

Paralogs for LOC105376556 Gene

No data available for Paralogs for LOC105376556 Gene

Variants for LOC105376556 Gene

Sequence variations from dbSNP and Humsavar for LOC105376556 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000001723 -- 12,623,562(+) T/C intron_variant
rs1000031949 -- 12,619,331(+) C/G/T non_coding_transcript_variant
rs1000147618 -- 12,619,610(+) T/C/G intron_variant
rs1000157631 -- 12,629,206(+) G/T intron_variant
rs1000161013 -- 12,642,190(+) C/T downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376556 Gene

Disorders for LOC105376556 Gene

No disorders were found for LOC105376556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376556 Gene

Publications for LOC105376556 Gene

No publications were found for LOC105376556 Gene.

No data available for External Links for LOC105376556 Gene

Products for LOC105376556 Gene

Sources for LOC105376556 Gene

Content
Loading form....