Aliases for LOC105376517 Gene

Subcategory (RNA class) for LOC105376517 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376517 Gene

  • Uncharacterized LOC105376517 3

External Ids for LOC105376517 Gene

Previous GeneCards Identifiers for LOC105376517 Gene

  • GC11U902247

Summaries for LOC105376517 Gene

GeneCards Summary for LOC105376517 Gene

LOC105376517 (Uncharacterized LOC105376517) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376517 Gene

Genomics for LOC105376517 Gene

GeneHancer (GH) Regulatory Elements for LOC105376517 Gene

Promoters and enhancers for LOC105376517 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J001777 Enhancer 0.7 ENCODE dbSUPER 750.6 +0.1 75 0.9 NR2C1 ZFHX2 ZNF687 FOS POLR2A CBFA2T3 ENSG00000230834 LOC105376517 ENSG00000235027
GH11J001780 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.6 -3.7 -3698 3.4 MYC MAX DACH1 TEAD4 NCOA3 MAFK CBFA2T2 IKZF1 CREB1 RNF2 LSP1 TNNI2 ENSG00000250397 SYT8 TOLLIP LOC105376517 RPL36AP39
GH11J001770 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.6 6645 3.8 ZNF785 ZBTB40 SREBF1 SMARCE1 SP1 ZNF148 GTF2F1 ZNF473 NCOA3 MAFK ENSG00000287484 lnc-CTSD-1 lnc-SYT8-4 IFITM10 TNNI2 TSPAN4 SNORA52 SYT8 KRTAP5-6 ENSG00000227306
GH11J001785 Enhancer 0.4 ENCODE dbSUPER 0.4 -7.4 -7353 0.2 POLR2A SYT8 LOC105376517 RPL36AP39
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376517 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376517 Gene

Genomic Locations for LOC105376517 Gene
chr11:1,771,396-1,778,593
(GRCh38/hg38)
Size:
7,198 bases
Orientation:
Minus strand

Genomic View for LOC105376517 Gene

Genes around LOC105376517 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376517 Gene

Proteins for LOC105376517 Gene

Post-translational modifications for LOC105376517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376517 Gene

Domains & Families for LOC105376517 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376517 Gene

Function for LOC105376517 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376517 Gene

Localization for LOC105376517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376517 Gene

Pathways & Interactions for LOC105376517 Gene

PathCards logo

SuperPathways for LOC105376517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376517 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376517 Gene

Drugs & Compounds for LOC105376517 Gene

No Compound Related Data Available

Transcripts for LOC105376517 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376517 Gene

No ASD Table

Relevant External Links for LOC105376517 Gene

GeneLoc Exon Structure for
LOC105376517

No data available for mRNA/cDNA for LOC105376517 Gene

Expression for LOC105376517 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376517 Gene

Orthologs for LOC105376517 Gene

No data available for Orthologs and Evolution for LOC105376517 Gene

Paralogs for LOC105376517 Gene

No data available for Paralogs for LOC105376517 Gene

Variants for LOC105376517 Gene

Sequence variations from dbSNP and Humsavar for LOC105376517 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000281159 -- 1,773,919(-) T/C intron_variant
rs1001116113 -- 1,771,319(-) C/A intron_variant
rs1001151372 -- 1,779,802(-) A/C/G upstream_transcript_variant
rs1001177300 -- 1,779,624(-) C/G upstream_transcript_variant
rs1001250420 -- 1,771,588(-) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376517 Gene

Disorders for LOC105376517 Gene

No disorders were found for LOC105376517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376517 Gene

Publications for LOC105376517 Gene

No publications were found for LOC105376517 Gene.

No data available for External Links for LOC105376517 Gene

Products for LOC105376517 Gene

Sources for LOC105376517 Gene