Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105376509 Gene

Subcategory (RNA class) for LOC105376509 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376509 Gene

  • Uncharacterized LOC105376509 3

External Ids for LOC105376509 Gene

Previous GeneCards Identifiers for LOC105376509 Gene

  • GC11U902495

Summaries for LOC105376509 Gene

GeneCards Summary for LOC105376509 Gene

LOC105376509 (Uncharacterized LOC105376509) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376509 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376509 Gene

Genomics for LOC105376509 Gene

GeneHancer (GH) Regulatory Elements for LOC105376509 Gene

Promoters and enhancers for LOC105376509 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J000737 Enhancer 0.9 FANTOM5 ENCODE dbSUPER 600.7 +1.3 1327 1.8 ZNF121 PKNOX1 TFAP4 CEBPB POLR2A LOC105376509 GC11P000743 GC11P000742 LOC171391 EPS8L2 TALDO1 TMEM80 ENSG00000255108 SIGIRR PKP3
GH11J000745 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.3 11333 5.1 SP1 ELF3 MNT ZNF148 NKRF MLLT1 POLR2A GTF2F1 ZNF687 BACH1 TALDO1 ENSG00000255108 RPLP2 MOB2 IRF7 LOC171391 CD151 DEAF1 TMEM80 IFITM2
GH11J000725 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.4 -9.4 -9357 3.6 ZFX CC2D1A CTCF MNT CBFA2T2 POLR2A NCOA6 ZBTB7A TRIM24 KLF14 ENSG00000269915 ENSG00000255108 TMEM80 PHRF1 LOC171391 PIDD1 SNORA52 TSPAN4 ENSG00000255158 CD151
GH11J000741 Enhancer 0.6 FANTOM5 0.7 +5.0 4995 0.3 ZNF121 RFX1 POLR2A HDAC2 STAT1 SMAD5 ZBTB33 SP1 ATF7 IRF7 LOC171391 GC11P000742 LOC105376509 GC11P000743 TALDO1
GH11J000729 Enhancer 0.9 ENCODE dbSUPER 0.4 -6.9 -6940 0.2 CEBPG SP1 ZNF384 SOX13 POLR2A FOXA2 CREM ZNF792 TFAP4 SREBF1 ENSG00000269915 LOC105376509
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376509 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376509 Gene

Genomic Locations for LOC105376509 Gene
chr11:736,676-747,315
(GRCh38/hg38)
Size:
10,640 bases
Orientation:
Plus strand

Genomic View for LOC105376509 Gene

Genes around LOC105376509 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376509 Gene

Proteins for LOC105376509 Gene

Post-translational modifications for LOC105376509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376509 Gene

Domains & Families for LOC105376509 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376509 Gene

Function for LOC105376509 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376509 Gene

Localization for LOC105376509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376509 Gene

Pathways & Interactions for LOC105376509 Gene

PathCards logo

SuperPathways for LOC105376509 Gene

No Data Available

Interacting Proteins for LOC105376509 Gene

Gene Ontology (GO) - Biological Process for LOC105376509 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376509 Gene

Drugs & Compounds for LOC105376509 Gene

No Compound Related Data Available

Transcripts for LOC105376509 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376509 Gene

No ASD Table

Relevant External Links for LOC105376509 Gene

GeneLoc Exon Structure for
LOC105376509

No data available for mRNA/cDNA for LOC105376509 Gene

Expression for LOC105376509 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376509 Gene

Orthologs for LOC105376509 Gene

No data available for Orthologs and Evolution for LOC105376509 Gene

Paralogs for LOC105376509 Gene

No data available for Paralogs for LOC105376509 Gene

Variants for LOC105376509 Gene

Sequence variations from dbSNP and Humsavar for LOC105376509 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs373293125 uncertain-significance, Deficiency of transaldolase 747,452(+) C/T downstream_transcript_variant
rs71464113 likely-benign, uncertain-significance, Deficiency of transaldolase 747,446(+) CGCCGCCGCCGCCGCCGC/CGCCGC/CGCCGCCGCCGCCGC/CGCCGCCGCCGCCGCCGCCGC/CGCCGCCGCCGCCGCCGCCGCCGC/CGCCGCCGCCGCCGCCGCCGCCGCCGC downstream_transcript_variant
rs886048655 uncertain-significance, Deficiency of transaldolase 747,445(+) T/A/C downstream_transcript_variant
rs1000316153 -- 736,502(+) A/C non_coding_transcript_variant
rs1000499046 -- 743,376(+) T/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376509 Gene

Disorders for LOC105376509 Gene

No disorders were found for LOC105376509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376509 Gene

Publications for LOC105376509 Gene

No publications were found for LOC105376509 Gene.

No data available for External Links for LOC105376509 Gene

Products for LOC105376509 Gene

Sources for LOC105376509 Gene

Content
Loading form....