LOC105376478 Gene (RNA Gene)

Uncharacterized LOC105376478

GC10P030529
GIFtS:
4

Aliases for LOC105376478 Gene

Subcategory (RNA class) for LOC105376478 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376478 Gene

  • Uncharacterized LOC105376478 3

External Ids for LOC105376478 Gene

Previous GeneCards Identifiers for LOC105376478 Gene

  • GC10U902261

Summaries for LOC105376478 Gene

GeneCards Summary for LOC105376478 Gene

LOC105376478 (Uncharacterized LOC105376478) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376478 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376478 Gene

Genomics for LOC105376478 Gene

GeneHancer (GH) Regulatory Elements for LOC105376478 Gene

Promoters and enhancers for LOC105376478 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J030525 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 750.6 -1.3 -1290 6.1 ZNF24 ZBTB40 SP1 LCORL NR2F6 CREB1 HCFC1 MIXL1 MYC ETV6 ENSG00000287420 LOC105376478 piR-51137-011 MAP3K8 SVIL ZNF438 SPTLC1P1 SVIL2P HNRNPA1P32
GH10J030531 Enhancer 0.7 ENCODE dbSUPER 0.6 +3.0 3024 1.7 CBFA2T2 MLLT1 ZKSCAN8 STAT1 DPF2 CEBPB KDM1A CBFA2T3 MAP3K8 ENSG00000287420 LOC105376478 piR-51137-011 lnc-LYZL2-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376478 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376478 Gene

Genomic Locations for LOC105376478 Gene
chr10:30,529,557-30,533,734
(GRCh38/hg38)
Size:
4,178 bases
Orientation:
Plus strand

Genomic View for LOC105376478 Gene

Genes around LOC105376478 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376478 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105376478 Gene

Proteins for LOC105376478 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105376478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376478 Gene

Domains & Families for LOC105376478 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376478 Gene

Function for LOC105376478 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105376478 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376478 Gene

Localization for LOC105376478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376478 Gene

Pathways & Interactions for LOC105376478 Gene

PathCards logo

SuperPathways for LOC105376478 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376478 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376478 Gene

Drugs & Compounds for LOC105376478 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105376478 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376478 Gene

No ASD Table

Relevant External Links for LOC105376478 Gene

GeneLoc Exon Structure for
LOC105376478

No data available for mRNA/cDNA for LOC105376478 Gene

Expression for LOC105376478 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376478 Gene

Orthologs for LOC105376478 Gene

No data available for Orthologs and Evolution for LOC105376478 Gene

Paralogs for LOC105376478 Gene

No data available for Paralogs for LOC105376478 Gene

Variants for LOC105376478 Gene

Sequence variations from dbSNP and Humsavar for LOC105376478 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000171313 -- 30,530,336(+) T/C intron_variant
rs1000381341 -- 30,534,021(+) C/A/T downstream_transcript_variant
rs1000741408 -- 30,529,316(+) C/T non_coding_transcript_variant
rs1000778297 -- 30,528,959(+) C/G upstream_transcript_variant
rs1001709844 -- 30,528,874(+) A/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376478 Gene

Disorders for LOC105376478 Gene

No disorders were found for LOC105376478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376478 Gene

Publications for LOC105376478 Gene

No publications were found for LOC105376478 Gene.

No data available for External Links for LOC105376478 Gene

Products for LOC105376478 Gene

Sources for LOC105376478 Gene