Aliases for LOC105376477 Gene

Subcategory (RNA class) for LOC105376477 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376477 Gene

  • Uncharacterized LOC105376477 3

External Ids for LOC105376477 Gene

Previous GeneCards Identifiers for LOC105376477 Gene

  • GC10U902267

Summaries for LOC105376477 Gene

GeneCards Summary for LOC105376477 Gene

LOC105376477 (Uncharacterized LOC105376477) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376477 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376477 Gene

Genomics for LOC105376477 Gene

GeneHancer (GH) Regulatory Elements for LOC105376477 Gene

Promoters and enhancers for LOC105376477 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J030181 Enhancer 1.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.4 -14.7 -14708 3.1 ZNF217 FOSL2 POLR2A CTBP1 SP1 FOS DPF2 ELF1 JUND SMARCE1 JCAD LOC105376477 piR-39099-036 lnc-JCAD-2 RF00017-633
GH10J030190 Enhancer 1 Ensembl ENCODE 0.4 -6.3 -6269 1.1 SMARCE1 L3MBTL2 DACH1 ZNF148 CBFA2T2 SMARCA4 TRIM24 MTA1 GMEB1 DPF2 JCAD LOC105376477 piR-39099-036 lnc-JCAD-2 RF00017-633
GH10J030185 Enhancer 0.8 ENCODE 0.4 -9.4 -9351 4 RBPJ RAD21 SP1 CTCF ZNF680 ZNF644 POLR2A RXRA REST RXRB JCAD ENSG00000259994 LOC105376477 piR-39099-036 lnc-JCAD-2 RF00017-633
GH10J030175 Enhancer 0.7 Ensembl ENCODE 0.4 -19.4 -19405 3.5 MAFK CEBPB ZNF316 FOS CEBPG EMSY JCAD piR-39099-036 LOC105376477 lnc-JCAD-2 RF00017-633
GH10J030170 Enhancer 0.7 Ensembl 0.3 -26.1 -26080 1.2 SMARCE1 TCF7L2 SMARCA4 PRDM1 TRIM24 POLR2A ZNF512 CEBPB JUN JUND JCAD piR-39099-036 LOC105376477 lnc-JCAD-2 RF00017-633
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376477 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376477 Gene

Genomic Locations for LOC105376477 Gene
chr10:30,197,081-30,206,208
(GRCh38/hg38)
Size:
9,128 bases
Orientation:
Plus strand

Genomic View for LOC105376477 Gene

Genes around LOC105376477 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376477 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376477 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376477 Gene

Proteins for LOC105376477 Gene

Post-translational modifications for LOC105376477 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376477 Gene

Domains & Families for LOC105376477 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376477 Gene

Function for LOC105376477 Gene

Phenotypes From GWAS Catalog for LOC105376477 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376477 Gene

Localization for LOC105376477 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376477 Gene

Pathways & Interactions for LOC105376477 Gene

PathCards logo

SuperPathways for LOC105376477 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376477 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376477 Gene

Drugs & Compounds for LOC105376477 Gene

No Compound Related Data Available

Transcripts for LOC105376477 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376477 Gene

No ASD Table

Relevant External Links for LOC105376477 Gene

GeneLoc Exon Structure for
LOC105376477

No data available for mRNA/cDNA for LOC105376477 Gene

Expression for LOC105376477 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376477 Gene

Orthologs for LOC105376477 Gene

No data available for Orthologs and Evolution for LOC105376477 Gene

Paralogs for LOC105376477 Gene

No data available for Paralogs for LOC105376477 Gene

Variants for LOC105376477 Gene

Sequence variations from dbSNP and Humsavar for LOC105376477 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000010449 -- 30,203,225(+) C/T intron_variant
rs1000313855 -- 30,197,627(+) C/A/T non_coding_transcript_variant
rs1000493720 -- 30,205,313(+) G/C intron_variant
rs1000887288 -- 30,199,290(+) T/A intron_variant
rs1000918462 -- 30,199,026(+) G/A/C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376477 Gene

Disorders for LOC105376477 Gene

No disorders were found for LOC105376477 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376477 Gene

Publications for LOC105376477 Gene

No publications were found for LOC105376477 Gene.

No data available for External Links for LOC105376477 Gene

Products for LOC105376477 Gene

Sources for LOC105376477 Gene