LOC105376431 Gene (RNA Gene)

Uncharacterized LOC105376431

GC10P015104
GIFtS:
4

Aliases for LOC105376431 Gene

Subcategory (RNA class) for LOC105376431 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376431 Gene

  • Uncharacterized LOC105376431 3

External Ids for LOC105376431 Gene

Previous GeneCards Identifiers for LOC105376431 Gene

  • GC10U901967

Summaries for LOC105376431 Gene

GeneCards Summary for LOC105376431 Gene

LOC105376431 (Uncharacterized LOC105376431) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376431 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376431 Gene

Genomics for LOC105376431 Gene

GeneHancer (GH) Regulatory Elements for LOC105376431 Gene

Promoters and enhancers for LOC105376431 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J015096 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -6.6 -6610 3.4 ZBTB40 RBPJ POLR2A USF2 MIXL1 ZNF362 ETV6 ELF1 L3MBTL2 MNT RPP38 RPP38-DT lnc-OLAH-1 lnc-RPP38-1 HSPA14 ACBD7 LOC105376431
GH10J015106 Enhancer 0.8 Ensembl ENCODE 0.6 +2.6 2578 1.4 CTCF RAD21 ZNF652 IKZF1 REST PRDM10 TRIM22 IKZF2 GATAD2A ZNF143 OLAH RPP38-DT RPP38 ACBD7 LOC105376431 lnc-RPP38-1 lnc-NMT2-2 NMT2
GH10J015120 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +18.2 18163 4.3 TCF7L2 NKRF MLLT1 RELA ZBTB33 IKZF1 TRIM22 IKZF2 ZNF143 ATF7 RPP38-DT ACBD7 GAPDHP45 RPP38 DCLRE1CP1 OLAH lnc-NMT2-2 LOC105376431 lnc-RPP38-1 PPIAP30
GH10J015137 Enhancer 0.9 FANTOM5 Ensembl 0.3 +33.1 33082 0.8 SP1 BACH1 ZNF639 CREB1 GATAD2A FOXA2 PKNOX1 ZNF316 NFE2 JUND ACBD7 RPP38 RPP38-DT GAPDHP45 DCLRE1CP1 PPIAP30 lnc-NMT2-2 LOC105376431 NMT2 lnc-RPP38-1
GH10J015101 Enhancer 0.2 Ensembl 0.6 -3.1 -3110 0.4 RPP38 LOC105376431 lnc-OLAH-1 lnc-RPP38-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376431 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376431 Gene

Genomic Locations for LOC105376431 Gene
chr10:15,104,511-15,140,192
(GRCh38/hg38)
Size:
35,682 bases
Orientation:
Plus strand

Genomic View for LOC105376431 Gene

Genes around LOC105376431 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376431 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376431 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105376431 Gene

Proteins for LOC105376431 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105376431 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376431 Gene

Domains & Families for LOC105376431 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376431 Gene

Function for LOC105376431 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376431 Gene

Localization for LOC105376431 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376431 Gene

Pathways & Interactions for LOC105376431 Gene

PathCards logo

SuperPathways for LOC105376431 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376431 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376431 Gene

Drugs & Compounds for LOC105376431 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105376431 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376431 Gene

No ASD Table

Relevant External Links for LOC105376431 Gene

GeneLoc Exon Structure for
LOC105376431

No data available for mRNA/cDNA for LOC105376431 Gene

Expression for LOC105376431 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376431 Gene

Orthologs for LOC105376431 Gene

No data available for Orthologs and Evolution for LOC105376431 Gene

Paralogs for LOC105376431 Gene

No data available for Paralogs for LOC105376431 Gene

Variants for LOC105376431 Gene

Sequence variations from dbSNP and Humsavar for LOC105376431 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000099667 -- 15,106,909(+) C/T intron_variant
rs1000149096 -- 15,114,613(+) T/C/G intron_variant
rs1000203375 -- 15,114,915(+) T/A/C intron_variant
rs1000327034 -- 15,116,225(+) G/A intron_variant
rs1000482430 -- 15,113,210(+) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376431 Gene

Disorders for LOC105376431 Gene

No disorders were found for LOC105376431 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376431 Gene

Publications for LOC105376431 Gene

No publications were found for LOC105376431 Gene.

No data available for External Links for LOC105376431 Gene

Products for LOC105376431 Gene

Sources for LOC105376431 Gene