Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105376235 Gene

Subcategory (RNA class) for LOC105376235 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376235 Gene

  • Uncharacterized LOC105376235 3

External Ids for LOC105376235 Gene

Previous GeneCards Identifiers for LOC105376235 Gene

  • GC09U902211

Summaries for LOC105376235 Gene

GeneCards Summary for LOC105376235 Gene

LOC105376235 (Uncharacterized LOC105376235) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376235 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376235 Gene

Genomics for LOC105376235 Gene

GeneHancer (GH) Regulatory Elements for LOC105376235 Gene

Promoters and enhancers for LOC105376235 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J115589 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.3 -2291 9.5 CTCF ELF3 CEBPG ZSCAN21 SP7 ELF1 SP1 ZNF644 RAD21 FOSL2 ENSG00000234692 TNC LOC105376235 ENSG00000228714 LOC105376232
GH09J115604 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.6 8568 1.6 POLR2A FOS EP300 JUND LOC105376235 PIR43594 ENSG00000228714
GH09J115614 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +19.8 19810 4.2 MAFK POLR2A JUN SP1 RCOR1 ATF3 JUND FOS EP300 STAT3 ENSG00000234692 LOC105376235 PIR43594 ENSG00000228714
GH09J115648 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +53.9 53879 3.2 SP1 RXRA FOXA2 JUND FOS YY1 ZBTB33 NR2F2 HNF4A BCL6 ENSG00000234692 PIR43594 LOC105376235 ENSG00000228714
GH09J115667 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +74.9 74926 7.6 POLR2A CEBPB CHD2 JUN SP1 ATF3 JUND MAX FOS EP300 ENSG00000234692 PIR43594 ENSG00000228714 LOC105376235
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376235 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376235 Gene

Genomic Locations for LOC105376235 Gene
chr9:115,596,658-115,672,726
(GRCh38/hg38)
Size:
76,069 bases
Orientation:
Plus strand

Genomic View for LOC105376235 Gene

Genes around LOC105376235 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376235 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376235 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376235 Gene

Proteins for LOC105376235 Gene

Post-translational modifications for LOC105376235 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376235 Gene

Domains & Families for LOC105376235 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376235 Gene

Function for LOC105376235 Gene

Phenotypes From GWAS Catalog for LOC105376235 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376235 Gene

Localization for LOC105376235 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376235 Gene

Pathways & Interactions for LOC105376235 Gene

PathCards logo

SuperPathways for LOC105376235 Gene

No Data Available

Interacting Proteins for LOC105376235 Gene

Gene Ontology (GO) - Biological Process for LOC105376235 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376235 Gene

Drugs & Compounds for LOC105376235 Gene

No Compound Related Data Available

Transcripts for LOC105376235 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376235 Gene

No ASD Table

Relevant External Links for LOC105376235 Gene

GeneLoc Exon Structure for
LOC105376235

No data available for mRNA/cDNA for LOC105376235 Gene

Expression for LOC105376235 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376235 Gene

Orthologs for LOC105376235 Gene

No data available for Orthologs and Evolution for LOC105376235 Gene

Paralogs for LOC105376235 Gene

No data available for Paralogs for LOC105376235 Gene

Variants for LOC105376235 Gene

Sequence variations from dbSNP and Humsavar for LOC105376235 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000013077 -- 115,614,372(+) C/A intron_variant
rs1000047910 -- 115,657,218(+) T/C intron_variant
rs1000057346 -- 115,626,196(+) A/G intron_variant
rs1000070186 -- 115,659,895(+) C/G/T intron_variant
rs1000078557 -- 115,656,946(+) TTATTATTATT/TTATTATT intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376235 Gene

Disorders for LOC105376235 Gene

No disorders were found for LOC105376235 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376235 Gene

Publications for LOC105376235 Gene

No publications were found for LOC105376235 Gene.

No data available for External Links for LOC105376235 Gene

Products for LOC105376235 Gene

Sources for LOC105376235 Gene

Content
Loading form....