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LOC105376222 Gene(RNA Gene)

Uncharacterized LOC105376222

GCID:
GC09P114455
GIFtS:
5
Genes Participants
UDN Logo

Aliases for LOC105376222 Gene

Subcategory (RNA class) for LOC105376222 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376222 Gene

  • Uncharacterized LOC105376222 3

External Ids for LOC105376222 Gene

Previous GeneCards Identifiers for LOC105376222 Gene

  • GC09U902361
  • GC09P113723
  • GC09P114403
  • GC09P113725
  • GC09P113727
  • GC09P113738
  • GC09P113868
  • GC09P113994
  • GC09P114121
  • GC09P114254
  • GC09P114338

Summaries for LOC105376222 Gene

GeneCards Summary for LOC105376222 Gene

LOC105376222 (Uncharacterized LOC105376222) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376222 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376222 Gene

Genomics for LOC105376222 Gene

GeneHancer (GH) Regulatory Elements for LOC105376222 Gene

Promoters and enhancers for LOC105376222 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J113613 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 600.7 +0.9 890 4 CDC5L SP1 ZNF644 EGR1 IKZF1 RXRA IKZF2 RELA ZBTB20 DPF2 LOC105376222 ENSG00000282897 C9orf43 ZFP37 ZNF618 POLE3 ALAD
GH09J113614 Enhancer 0.4 Ensembl dbSUPER 600.7 -1.5 -1456 0.2 LOC105376222 LOC105376221
GH09J113619 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.8 6760 5.3 SP1 ELF3 MAFK SP7 SP5 ZNF644 IKZF1 CREB1 GLIS2 POLR2A ZNF618 ALAD RGS3 ENSG00000233817 LOC105376222 PIR57208
GH09J113591 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -17.6 -17569 12.8 SP1 ZNF652 ELF3 CTCF MAFK ELF1 POLR2A SP5 ZNF384 MZF1 RGS3 C9orf43 ALAD RNF183 LOC105376221 LOC105376222
GH09J113609 Enhancer 1.1 ENCODE dbSUPER 0.7 -4.5 -4543 2.2 SP1 ELF3 CEBPG RERE NFIB TFE3 PPARG ZNF548 ZNF644 KAT8 C9orf43 PRPF4 CDC26 RGS3 ALAD FKBP15 SLC31A1 LOC105376222 LOC105376221
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376222 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376222 Gene

Genomic Locations for LOC105376222 Gene
chr9:113,614,957-113,628,746
(GRCh38/hg38)
Size:
13,790 bases
Orientation:
Plus strand

Genomic View for LOC105376222 Gene

Genes around LOC105376222 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376222 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376222 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105376222 Gene

Proteins for LOC105376222 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105376222 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376222 Gene

Domains & Families for LOC105376222 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376222 Gene

Function for LOC105376222 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105376222 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376222 Gene

Localization for LOC105376222 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376222 Gene

Pathways & Interactions for LOC105376222 Gene

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SuperPathways for LOC105376222 Gene

No Data Available

Interacting Proteins for LOC105376222 Gene

Gene Ontology (GO) - Biological Process for LOC105376222 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376222 Gene

Drugs & Compounds for LOC105376222 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LOC105376222 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376222 Gene

No ASD Table

Relevant External Links for LOC105376222 Gene

GeneLoc Exon Structure for
LOC105376222

No data available for mRNA/cDNA for LOC105376222 Gene

Expression for LOC105376222 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376222 Gene

Orthologs for LOC105376222 Gene

No data available for Orthologs and Evolution for LOC105376222 Gene

Paralogs for LOC105376222 Gene

No data available for Paralogs for LOC105376222 Gene

Variants for LOC105376222 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LOC105376222 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000240096 -- 113,619,282(+) A/G genic_upstream_transcript_variant, intron_variant
rs1000846977 -- 113,620,762(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000881674 -- 113,625,666(+) C/T intron_variant, non_coding_transcript_variant
rs1000941382 -- 113,626,620(+) C/T intron_variant
rs1001108954 -- 113,619,535(+) A/G genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376222 Gene

Disorders for LOC105376222 Gene

No disorders were found for LOC105376222 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376222 Gene

Publications for LOC105376222 Gene

No publications were found for LOC105376222 Gene.

No data available for External Links for LOC105376222 Gene

Products for LOC105376222 Gene

Sources for LOC105376222 Gene

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