LOC105376196 Gene (RNA Gene)

Uncharacterized LOC105376196

GC09P104928
GIFtS:
5

Aliases for LOC105376196 Gene

Subcategory (RNA class) for LOC105376196 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105376196 Gene

  • Uncharacterized LOC105376196 3

External Ids for LOC105376196 Gene

Previous GeneCards Identifiers for LOC105376196 Gene

  • GC09U902391

Summaries for LOC105376196 Gene

GeneCards Summary for LOC105376196 Gene

LOC105376196 (Uncharacterized LOC105376196) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376196 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376196 Gene

Genomics for LOC105376196 Gene

GeneHancer (GH) Regulatory Elements for LOC105376196 Gene

Promoters and enhancers for LOC105376196 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J104925 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.0 24 4 CTCF FOXA1 RBPJ POLR2A CREB1 MIXL1 MYC L3MBTL2 RAD21 MAX ENSG00000226334 ABCA1 LOC105376196
GH09J104922 Promoter/Enhancer 1 Ensembl ENCODE dbSUPER 0.6 -3.7 -3721 2.3 CEBPG CEBPA CEBPB SOX13 RUNX3 ARID4B RXRA ENSG00000226334 ABCA1 LOC105376196 lnc-NIPSNAP3B-4
GH09J104906 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.3 -20.1 -20138 2 RAD21 SP1 ZNF384 POLR2A RXRA FOXA2 JUND ATF3 YY1 ZBTB33 lnc-NIPSNAP3B-4 ENSG00000226334 ABCA1 OR13C3 SLC44A1 LOC105376196
GH09J104914 Enhancer 0.6 dbSUPER 0.4 -11.6 -11588 2.1 SP1 RXRA GATAD2A NFE2 ZBTB26 POLR2A YY1 JUND NR2F2 CEBPG ENSG00000226334 lnc-NIPSNAP3B-4 LOC105376196 ABCA1
GH09J104909 Enhancer 0.6 ENCODE dbSUPER 0.4 -16.9 -16907 1.4 SP1 RXRA IRF2 FOXA2 TAF1 lnc-NIPSNAP3B-4 ABCA1 LOC105376196
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376196 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376196 Gene

Genomic Locations for LOC105376196 Gene
chr9:104,927,177-104,939,050
(GRCh38/hg38)
Size:
11,874 bases
Orientation:
Plus strand

Genomic View for LOC105376196 Gene

Genes around LOC105376196 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376196 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376196 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105376196 Gene

Proteins for LOC105376196 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105376196 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376196 Gene

Domains & Families for LOC105376196 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376196 Gene

Function for LOC105376196 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105376196 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376196 Gene

Localization for LOC105376196 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376196 Gene

Pathways & Interactions for LOC105376196 Gene

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SuperPathways for LOC105376196 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376196 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376196 Gene

Drugs & Compounds for LOC105376196 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105376196 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC105376196 Gene

(1) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376196 Gene

No ASD Table

Relevant External Links for LOC105376196 Gene

GeneLoc Exon Structure for
LOC105376196

Expression for LOC105376196 Gene

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  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376196 Gene

Orthologs for LOC105376196 Gene

No data available for Orthologs and Evolution for LOC105376196 Gene

Paralogs for LOC105376196 Gene

No data available for Paralogs for LOC105376196 Gene

Variants for LOC105376196 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC105376196 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs111292742 likely-benign, Familial High Density Lipoprotein Deficiency, Tangier disease 104,928,121(+) G/A/C intron_variant
rs1800977 benign, Tangier disease, Familial High Density Lipoprotein Deficiency 104,928,169(+) G/A/C intron_variant
rs192053696 uncertain-significance, Tangier disease, Familial High Density Lipoprotein Deficiency 104,927,981(+) A/G intron_variant
rs2740483 benign, Familial High Density Lipoprotein Deficiency, Tangier disease 104,928,254(+) G/C intron_variant
rs755894358 uncertain-significance, Tangier disease, Familial High Density Lipoprotein Deficiency 104,927,956(+) G/A/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376196 Gene

Disorders for LOC105376196 Gene

No disorders were found for LOC105376196 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376196 Gene

Publications for LOC105376196 Gene

No publications were found for LOC105376196 Gene.

No data available for External Links for LOC105376196 Gene

Products for LOC105376196 Gene

Sources for LOC105376196 Gene