LOC105376194 Gene (RNA Gene)

Uncharacterized LOC105376194

GC09P104272
GIFtS:
5
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Aliases for LOC105376194 Gene

Subcategory (RNA class) for LOC105376194 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105376194 Gene

  • Uncharacterized LOC105376194 3
  • NONHSAG053089.2 91
  • HSALNG0073391 164
  • Lnc-SMC2-140 165

External Ids for LOC105376194 Gene

Previous GeneCards Identifiers for LOC105376194 Gene

  • GC09U902195

Summaries for LOC105376194 Gene

GeneCards Summary for LOC105376194 Gene

LOC105376194 (Uncharacterized LOC105376194) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105376194 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105376194 Gene

Genomics for LOC105376194 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105376194 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH09J104270 Enhancer 0.6 ENCODE 600.7 +0.2 206 0.1 REST SP1 CEBPA CEBPB FOXA2 YY1 HNF4A NFIL3 RXRA HLF LOC105376194 TOPORSLP piR-33998-012 SMC2 OR13F1
GH09J104280 Enhancer 0.5 Ensembl 0.4 +10.1 10072 0.2 OSR2 KLF8 HIC1 JUND FEZF1 KLF16 LOC105376194 TOPORSLP piR-33998-012 SMC2 OR13F1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105376194 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105376194 Gene

Genomic Locations for LOC105376194 Gene
chr9:104,270,229-104,286,955
(GRCh38/hg38)
Size:
16,727 bases
Orientation:
Plus strand

Genomic View for LOC105376194 Gene

Genes around LOC105376194 on UCSC Golden Path with GeneCards custom track
LOC105376194 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105376194 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376194 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105376194 Gene

Proteins for LOC105376194 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105376194 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376194 Gene

Domains & Families for LOC105376194 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105376194 Gene

Function for LOC105376194 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376194 Gene

Localization for LOC105376194 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376194 Gene

Pathways & Interactions for LOC105376194 Gene

PathCards logo

SuperPathways for LOC105376194 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105376194 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105376194 Gene

Drugs & Compounds for LOC105376194 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105376194 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105376194 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76D74_9606 lncRNA 613 2

RefSeq: NR_135141,

LNCipedia: lnc-SMC2-140:1,

URS00008BB2E7_9606 lncRNA 969 3

LncBook: HSALNT0153362,

LNCipedia: lnc-SMC2-140:2,

NONCODE: NONHSAT133793.2,

LOC105376194 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105376194 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376194 Gene

No ASD Table

Relevant External Links for LOC105376194 Gene

GeneLoc Exon Structure for
LOC105376194

Expression for LOC105376194 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376194 Gene

Orthologs for LOC105376194 Gene

No data available for Orthologs and Evolution for LOC105376194 Gene

Paralogs for LOC105376194 Gene

No data available for Paralogs for LOC105376194 Gene

Variants for LOC105376194 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC105376194 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376194 Gene

Disorders for LOC105376194 Gene

No disorders were found for LOC105376194 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376194 Gene

Publications for LOC105376194 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC105376194 Gene

Products for LOC105376194 Gene

Sources for LOC105376194 Gene