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Aliases for LOC105376139 Gene

Subcategory (RNA class) for LOC105376139 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105376139 Gene

  • Uncharacterized LOC105376139 3

External Ids for LOC105376139 Gene

Previous GeneCards Identifiers for LOC105376139 Gene

  • GC09U902360

Summaries for LOC105376139 Gene

GeneCards Summary for LOC105376139 Gene

LOC105376139 (Uncharacterized LOC105376139) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105376139 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105376139 Gene

Genomics for LOC105376139 Gene

GeneHancer (GH) Regulatory Elements for LOC105376139 Gene

Promoters and enhancers for LOC105376139 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I089603 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 -0.7 -678 5 PKNOX1 CLOCK SIN3A YY1 ZNF766 ZNF143 FOS REST ZNF610 SMARCA4 GADD45G LOC105376139 LOC286238 GC09M089619
GH09I089598 Enhancer 0.7 ENCODE 0.4 +6.6 6605 0.2 BCOR CTCF RB1 ZMYM3 ZNF2 RAD21 SCRT2 ZNF207 SMC3 ZNF143 LOC105376139 LOC105376137
GH09I089593 Enhancer 0.7 ENCODE 0.4 +11.1 11065 1.5 CTCF PKNOX1 FOXA2 SIN3A ZIC2 RAD21 ZKSCAN1 TEAD3 CTBP1 HSF1 GADD45G LOC105376139 LOC105376137
GH09I089555 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.2 +48.6 48589 1.8 FOXA2 MLX ARID4B SIN3A DMAP1 IRF4 ZNF48 ETS1 YY1 TCF12 SECISBP2 LOC105376137 LOC105376139
GH09I089534 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 +67.8 67778 5 CTCF ZSCAN4 MNT RAD21 ZFHX2 HNF1A NONO IKZF1 ATF7 RCOR1 SECISBP2 SEMA4D LOC105376137 LOC105376139
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105376139 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105376139 Gene

Genomic Locations for LOC105376139 Gene
chr9:89,598,783-89,604,896
(GRCh38/hg38)
Size:
6,114 bases
Orientation:
Minus strand

Genomic View for LOC105376139 Gene

Genes around LOC105376139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105376139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105376139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105376139 Gene

Proteins for LOC105376139 Gene

Post-translational modifications for LOC105376139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105376139 Gene

Domains & Families for LOC105376139 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105376139 Gene

Function for LOC105376139 Gene

Phenotypes From GWAS Catalog for LOC105376139 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105376139 Gene

Localization for LOC105376139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105376139 Gene

Pathways & Interactions for LOC105376139 Gene

SuperPathways for LOC105376139 Gene

No Data Available

Interacting Proteins for LOC105376139 Gene

Gene Ontology (GO) - Biological Process for LOC105376139 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105376139 Gene

Drugs & Compounds for LOC105376139 Gene

No Compound Related Data Available

Transcripts for LOC105376139 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105376139 Gene

No ASD Table

Relevant External Links for LOC105376139 Gene

GeneLoc Exon Structure for
LOC105376139

No data available for mRNA/cDNA for LOC105376139 Gene

Expression for LOC105376139 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105376139 Gene

Orthologs for LOC105376139 Gene

No data available for Orthologs and Evolution for LOC105376139 Gene

Paralogs for LOC105376139 Gene

No data available for Paralogs for LOC105376139 Gene

Variants for LOC105376139 Gene

Sequence variations from dbSNP and Humsavar for LOC105376139 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000130062 -- 89,600,220(-) C/G non_coding_transcript_variant
rs1000132182 -- 89,604,687(-) T/C non_coding_transcript_variant
rs1000446793 -- 89,604,460(-) C/T intron_variant, non_coding_transcript_variant
rs1000511747 -- 89,603,311(-) C/T intron_variant, non_coding_transcript_variant
rs1001434470 -- 89,604,862(-) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105376139 Gene

Disorders for LOC105376139 Gene

No disorders were found for LOC105376139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105376139 Gene

Publications for LOC105376139 Gene

No publications were found for LOC105376139 Gene.

Products for LOC105376139 Gene

Sources for LOC105376139 Gene

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