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Aliases for LOC105375623 Gene

Subcategory (RNA class) for LOC105375623 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375623 Gene

  • Uncharacterized LOC105375623 3
  • CTD-3118D11.3 3
  • AC084128.1 5

External Ids for LOC105375623 Gene

Previous GeneCards Identifiers for LOC105375623 Gene

  • GC08U902110

Summaries for LOC105375623 Gene

GeneCards Summary for LOC105375623 Gene

LOC105375623 (Uncharacterized LOC105375623) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375623 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375623 Gene

Genomics for LOC105375623 Gene

GeneHancer (GH) Regulatory Elements for LOC105375623 Gene

Promoters and enhancers for LOC105375623 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J086127 Enhancer 0.9 ENCODE 17.5 -51.9 -51940 1.7 FOXA2 MLX ARID4B DMAP1 YY1 ATF7 NFKBIZ RXRA REST KAT8 LOC105375623 LOC105375624 WWP1 ENSG00000253675 PSKH2 ATP6V0D2
GH08J086118 Enhancer 0.6 Ensembl 15.7 -61.5 -61501 1.1 RXRA MAX REST RAD21 GABPA YY1 SP1 JUND ATF3 EGR1 LOC105375623 PSKH2 ENSG00000253675 ATP6V0D2
GH08J086147 Enhancer 0.4 ENCODE 9.9 -32.2 -32153 1.1 CTCF RAD21 LOC105375623 WWP1 ENSG00000253675 PSKH2 ATP6V0D2
GH08J086175 Enhancer 0.8 Ensembl ENCODE 0.7 -4.1 -4071 2.5 RFX1 JUN DPF2 YBX1 FOXA1 SP1 CTBP1 JUND GATA3 ZBTB48 WWP1 LOC105375623 ENSG00000253675
GH08J086182 Enhancer 0.5 ENCODE 0.7 +2.0 2049 0.2 SMARCE1 ZNF217 CTBP1 GATA3 RFX1 GATAD2B DPF2 WWP1 LOC105375623 SLC7A13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375623 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375623 Gene

Genomic Locations for LOC105375623 Gene
chr8:86,180,418-86,212,477
(GRCh38/hg38)
Size:
32,060 bases
Orientation:
Plus strand
chr8:87,192,647-87,224,465
(GRCh37/hg19)
Size:
31,819 bases
Orientation:
Plus strand

Genomic View for LOC105375623 Gene

Genes around LOC105375623 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375623 Gene

Proteins for LOC105375623 Gene

Post-translational modifications for LOC105375623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375623 Gene

Domains & Families for LOC105375623 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375623 Gene

Function for LOC105375623 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375623 Gene

Localization for LOC105375623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375623 Gene

Pathways & Interactions for LOC105375623 Gene

SuperPathways for LOC105375623 Gene

No Data Available

Interacting Proteins for LOC105375623 Gene

Gene Ontology (GO) - Biological Process for LOC105375623 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375623 Gene

Drugs & Compounds for LOC105375623 Gene

No Compound Related Data Available

Transcripts for LOC105375623 Gene

mRNA/cDNA for LOC105375623 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375623 Gene

No ASD Table

Relevant External Links for LOC105375623 Gene

GeneLoc Exon Structure for
LOC105375623

Expression for LOC105375623 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375623 Gene

Orthologs for LOC105375623 Gene

Evolution for LOC105375623 Gene

ENSEMBL:
Gene Tree for LOC105375623 (if available)
TreeFam:
Gene Tree for LOC105375623 (if available)

No data available for Orthologs for LOC105375623 Gene

Paralogs for LOC105375623 Gene

No data available for Paralogs for LOC105375623 Gene

Variants for LOC105375623 Gene

Sequence variations from dbSNP and Humsavar for LOC105375623 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000038925 -- 86,190,284(+) T/C intron_variant
rs1000236734 -- 86,179,979(+) T/C upstream_transcript_variant
rs1000299078 -- 86,191,405(+) C/T intron_variant
rs1000357071 -- 86,182,272(+) C/A intron_variant
rs1000451930 -- 86,182,478(+) C/G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375623 Gene

Disorders for LOC105375623 Gene

No disorders were found for LOC105375623 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375623 Gene

Publications for LOC105375623 Gene

No publications were found for LOC105375623 Gene.

Products for LOC105375623 Gene

Sources for LOC105375623 Gene

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