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Aliases for LOC105375586 Gene

Subcategory (RNA class) for LOC105375586 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375586 Gene

  • Uncharacterized LOC105375586 3
  • AC099552.3 5

External Ids for LOC105375586 Gene

Previous GeneCards Identifiers for LOC105375586 Gene

  • GC07U904341

Summaries for LOC105375586 Gene

GeneCards Summary for LOC105375586 Gene

LOC105375586 (Uncharacterized LOC105375586) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375586 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375586 Gene

Genomics for LOC105375586 Gene

GeneHancer (GH) Regulatory Elements for LOC105375586 Gene

Promoters and enhancers for LOC105375586 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J155204 Enhancer 0.6 Ensembl dbSUPER 659.8 -0.2 -199 0.2 NR2F1 MEF2B RELA LOC105375586 ENSG00000217825
GH07J155203 Enhancer 1.5 Ensembl ENCODE dbSUPER 8.7 +3.1 3084 6 FEZF1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 MCM3 SP3 MEF2D PAXIP1-AS2 PAXIP1 ENSG00000227365 LOC105375589 BLACE RBM33 LOC105375580 ENSG00000273183 PAXIP1-AS1 LOC105375586
GH07J155213 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.5 +10.6 10619 1.8 HDAC1 ATF1 NFIB KLF17 RAD21 YY1 ZNF335 GLIS2 GATA2 EGR1 INSIG1 LOC105375586 SHH ENSG00000278998
GH07J155215 Enhancer 0.7 dbSUPER 6.1 +14.7 14703 5.8 BCOR CTCF MAX ZMYM3 CEBPG ZIC2 RAD21 YY1 ZNF121 CTBP1 BLACE LOC105375586 ENSG00000278998
GH07J155198 Enhancer 1 ENCODE dbSUPER 0.7 -4.8 -4794 1.4 PKNOX1 ATF1 BATF IRF4 EGR1 FOS ETV6 BCLAF1 RUNX3 CREM ENSG00000217825 LOC105375586
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375586 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375586 Gene

Genomic Locations for LOC105375586 Gene
chr7:155,203,700-155,214,634
(GRCh38/hg38)
Size:
10,935 bases
Orientation:
Plus strand
chr7:154,995,857-154,996,899
(GRCh37/hg19)
Size:
1,043 bases
Orientation:
Plus strand

Genomic View for LOC105375586 Gene

Genes around LOC105375586 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375586 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375586 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375586 Gene

Proteins for LOC105375586 Gene

Post-translational modifications for LOC105375586 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375586 Gene

Domains & Families for LOC105375586 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375586 Gene

Function for LOC105375586 Gene

Phenotypes From GWAS Catalog for LOC105375586 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375586 Gene

Localization for LOC105375586 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375586 Gene

Pathways & Interactions for LOC105375586 Gene

SuperPathways for LOC105375586 Gene

No Data Available

Interacting Proteins for LOC105375586 Gene

Gene Ontology (GO) - Biological Process for LOC105375586 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375586 Gene

Drugs & Compounds for LOC105375586 Gene

No Compound Related Data Available

Transcripts for LOC105375586 Gene

mRNA/cDNA for LOC105375586 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375586 Gene

No ASD Table

Relevant External Links for LOC105375586 Gene

GeneLoc Exon Structure for
LOC105375586

Expression for LOC105375586 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375586 Gene

Orthologs for LOC105375586 Gene

Evolution for LOC105375586 Gene

ENSEMBL:
Gene Tree for LOC105375586 (if available)
TreeFam:
Gene Tree for LOC105375586 (if available)

No data available for Orthologs for LOC105375586 Gene

Paralogs for LOC105375586 Gene

No data available for Paralogs for LOC105375586 Gene

Variants for LOC105375586 Gene

Sequence variations from dbSNP and Humsavar for LOC105375586 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000078389 -- 155,224,438(+) C/T intron_variant
rs1000260299 -- 155,225,648(+) C/T intron_variant, non_coding_transcript_variant
rs1000387753 -- 155,221,427(+) C/G intron_variant
rs1000652753 -- 155,221,330(+) C/T intron_variant
rs1000769897 -- 155,222,678(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375586 Gene

Disorders for LOC105375586 Gene

No disorders were found for LOC105375586 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375586 Gene

Publications for LOC105375586 Gene

No publications were found for LOC105375586 Gene.

Products for LOC105375586 Gene

Sources for LOC105375586 Gene

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