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Aliases for LOC105375580 Gene

Subcategory (RNA class) for LOC105375580 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375580 Gene

  • Uncharacterized LOC105375580 3
  • AC073336.1 5

External Ids for LOC105375580 Gene

Previous GeneCards Identifiers for LOC105375580 Gene

  • GC07U904223

Summaries for LOC105375580 Gene

GeneCards Summary for LOC105375580 Gene

LOC105375580 (Uncharacterized LOC105375580) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375580 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375580 Gene

Genomics for LOC105375580 Gene

GeneHancer (GH) Regulatory Elements for LOC105375580 Gene

Promoters and enhancers for LOC105375580 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J155203 Enhancer 1.5 Ensembl ENCODE dbSUPER 10.9 -341.3 -341301 6 FEZF1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 MCM3 SP3 MEF2D PAXIP1-AS2 PAXIP1 ENSG00000227365 LOC105375589 BLACE RBM33 LOC105375580 ENSG00000273183 PAXIP1-AS1 LOC105375586
GH07J154841 Enhancer 0.7 ENCODE 11.9 +23.3 23320 1 GATA3 ZSCAN5C RCOR1 ZNF600 EZH2 CHD2 TCF7L2 ZNF362 CEBPB EP300 LOC105375580 DPP6 GC07P154834
GH07J154844 Enhancer 0.6 ENCODE 11.9 +20.3 20259 0.6 RXRA SAP130 HLF NFYC MAX REST FOXA1 SIN3B YY1 SP1 LOC105375580 DPP6 GC07P154834
GH07J154868 Enhancer 0.5 ENCODE 0.7 -3.8 -3816 0.7 POLR2A CBFA2T3 CBFA2T2 EZH2 LOC105375580 PAXIP1-AS2 DPP6
GH07J154912 Enhancer 1.1 Ensembl ENCODE 0.2 -48.6 -48598 2.5 PKNOX1 MLX ARID4B DMAP1 ZNF48 GLIS2 ZNF143 FOS ATF7 RXRA PAXIP1-AS2 LOC105375580
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375580 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375580 Gene

Genomic Locations for LOC105375580 Gene
chr7:154,825,116-154,865,483
(GRCh38/hg38)
Size:
40,368 bases
Orientation:
Minus strand
chr7:154,630,098-154,657,193
(GRCh37/hg19)
Size:
27,096 bases
Orientation:
Minus strand

Genomic View for LOC105375580 Gene

Genes around LOC105375580 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375580 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375580 Gene

Proteins for LOC105375580 Gene

Post-translational modifications for LOC105375580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375580 Gene

Domains & Families for LOC105375580 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375580 Gene

Function for LOC105375580 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375580 Gene

Localization for LOC105375580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375580 Gene

Pathways & Interactions for LOC105375580 Gene

SuperPathways for LOC105375580 Gene

No Data Available

Interacting Proteins for LOC105375580 Gene

Gene Ontology (GO) - Biological Process for LOC105375580 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375580 Gene

Drugs & Compounds for LOC105375580 Gene

No Compound Related Data Available

Transcripts for LOC105375580 Gene

mRNA/cDNA for LOC105375580 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375580 Gene

No ASD Table

Relevant External Links for LOC105375580 Gene

GeneLoc Exon Structure for
LOC105375580

Expression for LOC105375580 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375580 Gene

Orthologs for LOC105375580 Gene

Evolution for LOC105375580 Gene

ENSEMBL:
Gene Tree for LOC105375580 (if available)
TreeFam:
Gene Tree for LOC105375580 (if available)

No data available for Orthologs for LOC105375580 Gene

Paralogs for LOC105375580 Gene

No data available for Paralogs for LOC105375580 Gene

Variants for LOC105375580 Gene

Sequence variations from dbSNP and Humsavar for LOC105375580 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs140460765 uncertain-significance, not specified 154,853,824(-) A/C intron_variant
rs1000095199 -- 154,857,995(-) T/A intron_variant
rs1000110739 -- 154,854,995(-) G/T intron_variant
rs1000214690 -- 154,837,382(-) GCACGCAC/GCAC intron_variant
rs1000249188 -- 154,835,490(-) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375580 Gene

Disorders for LOC105375580 Gene

No disorders were found for LOC105375580 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375580 Gene

Publications for LOC105375580 Gene

No publications were found for LOC105375580 Gene.

Products for LOC105375580 Gene

Sources for LOC105375580 Gene

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