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Aliases for LOC105375549 Gene

Subcategory (RNA class) for LOC105375549 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105375549 Gene

  • Uncharacterized LOC105375549 3

External Ids for LOC105375549 Gene

Previous GeneCards Identifiers for LOC105375549 Gene

  • GC07U903951

Summaries for LOC105375549 Gene

GeneCards Summary for LOC105375549 Gene

LOC105375549 (Uncharacterized LOC105375549) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375549 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375549 Gene

Genomics for LOC105375549 Gene

GeneHancer (GH) Regulatory Elements for LOC105375549 Gene

Promoters and enhancers for LOC105375549 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I143884 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 550.8 -0.2 -157 1.4 CTCF MXI1 PKNOX1 ZBTB7B CHAMP1 ZNF335 ZFHX2 POLR2A EGR1 VEZF1 TCAF1 LOC105375549 ARHGEF35 GC07M143854
GH07I143886 Enhancer 0.2 Ensembl 550.8 +0.7 655 0.2 LOC105375549 OR2A13P TCAF1
GH07I143881 Promoter/Enhancer 1.3 Ensembl ENCODE 0.8 -3.1 -3100 2.3 ELF3 FOXA2 ARID4B SIN3A ZNF48 RAD21 RARA CREM THAP11 MIXL1 OR2A13P TCAF1 LOC105375549 GC07M143854
GH07I143898 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE 0.4 +17.7 17710 9 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 TCAF1 ARHGEF35 CASP2 OR2A13P OR2A25 OR2A12 ARHGEF34P OR2A2 OR2F1 LOC105375549
GH07I143892 Enhancer 0.8 ENCODE 0.4 +7.4 7377 0.2 HDAC1 ATF1 BATF RAD21 RFX5 CHAMP1 ZNF143 ATF7 IKZF2 CREM TCAF1 LOC105375549
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375549 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375549 Gene

Genomic Locations for LOC105375549 Gene
chr7:143,885,446-143,901,949
(GRCh38/hg38)
Size:
16,504 bases
Orientation:
Plus strand

Genomic View for LOC105375549 Gene

Genes around LOC105375549 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375549 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375549 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375549 Gene

Proteins for LOC105375549 Gene

Post-translational modifications for LOC105375549 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375549 Gene

Domains & Families for LOC105375549 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375549 Gene

Function for LOC105375549 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375549 Gene

Localization for LOC105375549 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375549 Gene

Pathways & Interactions for LOC105375549 Gene

SuperPathways for LOC105375549 Gene

No Data Available

Interacting Proteins for LOC105375549 Gene

Gene Ontology (GO) - Biological Process for LOC105375549 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375549 Gene

Drugs & Compounds for LOC105375549 Gene

No Compound Related Data Available

Transcripts for LOC105375549 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375549 Gene

No ASD Table

Relevant External Links for LOC105375549 Gene

GeneLoc Exon Structure for
LOC105375549

No data available for mRNA/cDNA for LOC105375549 Gene

Expression for LOC105375549 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375549 Gene

Orthologs for LOC105375549 Gene

No data available for Orthologs and Evolution for LOC105375549 Gene

Paralogs for LOC105375549 Gene

No data available for Paralogs for LOC105375549 Gene

Variants for LOC105375549 Gene

Sequence variations from dbSNP and Humsavar for LOC105375549 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000093960 -- 143,898,217(+) A/G intron_variant
rs1000374824 -- 143,890,980(+) A/T intron_variant
rs1000709123 -- 143,889,510(+) TTTT/TTT intron_variant
rs1000919222 -- 143,895,990(+) AATAATAA/AATAA intron_variant
rs1000926692 -- 143,883,510(+) T/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375549 Gene

Disorders for LOC105375549 Gene

No disorders were found for LOC105375549 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375549 Gene

Publications for LOC105375549 Gene

No publications were found for LOC105375549 Gene.

Products for LOC105375549 Gene

Sources for LOC105375549 Gene

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