Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105375545 Gene

Subcategory (RNA class) for LOC105375545 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105375545 Gene

  • Uncharacterized LOC105375545 3
  • AC073342.1 5

External Ids for LOC105375545 Gene

Previous GeneCards Identifiers for LOC105375545 Gene

  • GC07U904273

Summaries for LOC105375545 Gene

GeneCards Summary for LOC105375545 Gene

LOC105375545 (Uncharacterized LOC105375545) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375545 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375545 Gene

Genomics for LOC105375545 Gene

GeneHancer (GH) Regulatory Elements for LOC105375545 Gene

Promoters and enhancers for LOC105375545 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I143282 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 550.8 +0.8 833 7.1 HDGF FOXA2 PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CASP2 GC07M143288 PIR32183 LOC105375545 TMEM139 LOC154761 RN7SL535P ZYX TRPV6
GH07I143258 Enhancer 1.2 FANTOM5 Ensembl ENCODE 13.4 +28.1 28111 2.2 HDAC1 FOXA2 YY1 FOS SP3 RXRA CAVIN1 ZEB2 ZNF592 MTA1 TMEM139 CASP2 LOC105375545 RN7SL535P EPHA1 EPHA1-AS1 FAM131B HINT1P1 CLCN1 ZYX
GH07I143248 Enhancer 1.1 Ensembl ENCODE 11.7 +37.4 37377 2.6 ELF3 MLX ARID4B RAD21 RARA ETS1 YY1 ZNF280A THAP11 MIXL1 TMEM139 LOC105375545 CASP2 RN7SL535P FAM131B EPHB6 GSTK1 LOC105375546
GH07I143345 Enhancer 1.1 Ensembl ENCODE 11.1 -58.2 -58245 1 ATF1 SIN3A GLI4 ZNF2 YY1 GLIS2 ARID2 KLF7 ATF7 REST CLCN1 HINT1P1 ZYX LOC100507507 RN7SL535P LOC105375545 CASP2 TMEM139 EPHA1 EPHA1-AS1
GH07I143256 Enhancer 0.9 ENCODE 12.7 +30.3 30285 1.5 HDGF HDAC1 PKNOX1 ATF1 ZNF2 ZBTB40 CHAMP1 TCF12 GATA2 FOS TMEM139 LOC105375545 RN7SL535P CASP2 CLCN1 HINT1P1 EPHA1 EPHA1-AS1 LOC100507507 ZYX
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375545 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375545 Gene

Genomic Locations for LOC105375545 Gene
chr7:143,255,264-143,287,380
(GRCh38/hg38)
Size:
32,117 bases
Orientation:
Minus strand
chr7:142,952,357-142,984,473
(GRCh37/hg19)

Genomic View for LOC105375545 Gene

Genes around LOC105375545 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375545 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375545 Gene

Proteins for LOC105375545 Gene

Post-translational modifications for LOC105375545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375545 Gene

Domains & Families for LOC105375545 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375545 Gene

Function for LOC105375545 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375545 Gene

Localization for LOC105375545 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375545 Gene

Pathways & Interactions for LOC105375545 Gene

SuperPathways for LOC105375545 Gene

No Data Available

Interacting Proteins for LOC105375545 Gene

Gene Ontology (GO) - Biological Process for LOC105375545 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375545 Gene

Drugs & Compounds for LOC105375545 Gene

No Compound Related Data Available

Transcripts for LOC105375545 Gene

mRNA/cDNA for LOC105375545 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375545 Gene

No ASD Table

Relevant External Links for LOC105375545 Gene

GeneLoc Exon Structure for
LOC105375545

Expression for LOC105375545 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375545 Gene

Orthologs for LOC105375545 Gene

Evolution for LOC105375545 Gene

ENSEMBL:
Gene Tree for LOC105375545 (if available)
TreeFam:
Gene Tree for LOC105375545 (if available)

No data available for Orthologs for LOC105375545 Gene

Paralogs for LOC105375545 Gene

No data available for Paralogs for LOC105375545 Gene

Variants for LOC105375545 Gene

Sequence variations from dbSNP and Humsavar for LOC105375545 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000320871 -- 143,276,673(-) A/G intron_variant
rs1000525435 -- 143,285,162(-) T/G intron_variant
rs1000528142 -- 143,255,960(-) T/C intron_variant
rs1000553522 -- 143,273,737(-) A/G intron_variant
rs1000593564 -- 143,283,825(-) C/A intron_variant

Variation tolerance for LOC105375545 Gene

Gene Damage Index Score: 0.06; 1.42% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC105375545 Gene

Disorders for LOC105375545 Gene

Additional Disease Information for LOC105375545

No disorders were found for LOC105375545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105375545 Gene

Publications for LOC105375545 Gene

No publications were found for LOC105375545 Gene.

Products for LOC105375545 Gene

Sources for LOC105375545 Gene

Content
Loading form....