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Aliases for LOC105375539 Gene

Subcategory (RNA class) for LOC105375539 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375539 Gene

  • Uncharacterized LOC105375539 3

External Ids for LOC105375539 Gene

Previous GeneCards Identifiers for LOC105375539 Gene

  • GC07U903890

Summaries for LOC105375539 Gene

GeneCards Summary for LOC105375539 Gene

LOC105375539 (Uncharacterized LOC105375539) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375539 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375539 Gene

Genomics for LOC105375539 Gene

GeneHancer (GH) Regulatory Elements for LOC105375539 Gene

Promoters and enhancers for LOC105375539 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J142336 Enhancer 0.2 dbSUPER 650.7 -0.7 -746 1.3 LOC105375539 TRBV10-1 TRBV4-2 TRB
GH07J142338 Enhancer 0.7 ENCODE dbSUPER 0.7 -2.2 -2161 0.2 CTCF NFIC ZNF654 ZNF143 BACH1 RAD21 ZBTB17 LOC105375539 TRBV4-2 TRB
GH07J142323 Enhancer 0.9 ENCODE dbSUPER 0.4 +12.8 12813 0.2 CTCF RB1 KLF17 BACH1 ZIC2 RAD21 HIC1 GLIS2 ZBTB48 PATZ1 TRBV6-1 TRBV5-1 LOC105375539 TRB
GH07J142326 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.9 9850 0.5 ZNF362 ATF1 ZBTB21 ATF2 ZSCAN21 ZNF629 CREB1 NBN ATF7 FOS TRBV6-1 TRBV5-1 LOC105375539 TRB
GH07J142331 Enhancer 0.3 dbSUPER 0.7 +4.0 4017 1.4 ZBTB17 TRBV7-1 LOC105375539 TRB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375539 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375539 Gene

Genomic Locations for LOC105375539 Gene
chr7:142,321,556-142,336,648
(GRCh38/hg38)
Size:
15,093 bases
Orientation:
Minus strand

Genomic View for LOC105375539 Gene

Genes around LOC105375539 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375539 Gene

Proteins for LOC105375539 Gene

Post-translational modifications for LOC105375539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375539 Gene

Domains & Families for LOC105375539 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375539 Gene

Function for LOC105375539 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375539 Gene

Localization for LOC105375539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375539 Gene

Pathways & Interactions for LOC105375539 Gene

SuperPathways for LOC105375539 Gene

No Data Available

Interacting Proteins for LOC105375539 Gene

Gene Ontology (GO) - Biological Process for LOC105375539 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375539 Gene

Drugs & Compounds for LOC105375539 Gene

No Compound Related Data Available

Transcripts for LOC105375539 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375539 Gene

No ASD Table

Relevant External Links for LOC105375539 Gene

GeneLoc Exon Structure for
LOC105375539

No data available for mRNA/cDNA for LOC105375539 Gene

Expression for LOC105375539 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375539 Gene

Orthologs for LOC105375539 Gene

No data available for Orthologs and Evolution for LOC105375539 Gene

Paralogs for LOC105375539 Gene

No data available for Paralogs for LOC105375539 Gene

Variants for LOC105375539 Gene

Sequence variations from dbSNP and Humsavar for LOC105375539 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000242854 -- 142,305,612(-) G/A genic_downstream_transcript_variant, non_coding_transcript_variant
rs1000295891 -- 142,336,221(-) C/T non_coding_transcript_variant
rs1000365883 -- 142,313,915(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000437590 -- 142,311,857(-) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000562207 -- 142,307,436(-) C/T genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375539 Gene

Disorders for LOC105375539 Gene

No disorders were found for LOC105375539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375539 Gene

Publications for LOC105375539 Gene

No publications were found for LOC105375539 Gene.

Products for LOC105375539 Gene

Sources for LOC105375539 Gene

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