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Aliases for LOC105375536 Gene

Subcategory (RNA class) for LOC105375536 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375536 Gene

  • Uncharacterized LOC105375536 3
  • AC006006.1 5

External Ids for LOC105375536 Gene

Previous GeneCards Identifiers for LOC105375536 Gene

  • GC07U903961

Summaries for LOC105375536 Gene

GeneCards Summary for LOC105375536 Gene

LOC105375536 (Uncharacterized LOC105375536) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC105375536 include Noonan Syndrome With Multiple Lentigines.

Additional gene information for LOC105375536 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375536 Gene

Genomics for LOC105375536 Gene

GeneHancer (GH) Regulatory Elements for LOC105375536 Gene

Promoters and enhancers for LOC105375536 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J140923 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.5 -463 2.9 HDGF PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B SIN3A DMAP1 IRF4 LOC105375536 BRAF NDUFB2 TAS2R5 MRPS33 TAS2R6P NDUFB2-AS1 ADCK2 RNU6-85P
GH07J141013 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 +89.2 89246 2.6 FEZF1 DMAP1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D GLIS1 NBN MRPS33 TAS2R5 TAS2R6P SLC37A3 TMEM178B BRAF NDUFB2-AS1 NDUFB2 CCT4P1 LOC105375536
GH07J140972 Enhancer 0.9 ENCODE 0.2 +48.2 48211 1.7 PKNOX1 FOXA2 MLX ARID4B FEZF1 YY1 SLC30A9 RXRA SP5 REST TMEM178B BRAF NDUFB2 NDUFB2-AS1 CCT4P1 LOC105375536
GH07J140975 Enhancer 0.9 ENCODE 0.2 +51.2 51227 1.4 FOXA2 ZSCAN4 ARID4B RAD21 ETS1 YY1 CREM RXRA ZHX2 GATAD2B TMEM178B BRAF NDUFB2 NDUFB2-AS1 CCT4P1 LOC105375536
GH07J141012 Enhancer 0.9 Ensembl ENCODE 0.2 +87.3 87305 0.4 MEIS2 CTCF IRF2 PKNOX1 SAP130 ARID4B SIN3A EBF1 ZNF384 ZNF2 BRAF NDUFB2-AS1 NDUFB2 MRPS33 CCT4P1 LOC105375536
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375536 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375536 Gene

Genomic Locations for LOC105375536 Gene
chr7:140,925,086-141,014,544
(GRCh38/hg38)
Size:
89,459 bases
Orientation:
Plus strand
chr7:140,634,667-140,634,810
(GRCh37/hg19)
Size:
144 bases
Orientation:
Plus strand

Genomic View for LOC105375536 Gene

Genes around LOC105375536 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375536 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375536 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375536 Gene

Proteins for LOC105375536 Gene

Post-translational modifications for LOC105375536 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375536 Gene

Domains & Families for LOC105375536 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375536 Gene

Function for LOC105375536 Gene

Phenotypes From GWAS Catalog for LOC105375536 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375536 Gene

Localization for LOC105375536 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375536 Gene

Pathways & Interactions for LOC105375536 Gene

SuperPathways for LOC105375536 Gene

No Data Available

Interacting Proteins for LOC105375536 Gene

Gene Ontology (GO) - Biological Process for LOC105375536 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375536 Gene

Drugs & Compounds for LOC105375536 Gene

No Compound Related Data Available

Transcripts for LOC105375536 Gene

mRNA/cDNA for LOC105375536 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375536 Gene

No ASD Table

Relevant External Links for LOC105375536 Gene

GeneLoc Exon Structure for
LOC105375536

Expression for LOC105375536 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375536 Gene

Orthologs for LOC105375536 Gene

Evolution for LOC105375536 Gene

ENSEMBL:
Gene Tree for LOC105375536 (if available)
TreeFam:
Gene Tree for LOC105375536 (if available)

No data available for Orthologs for LOC105375536 Gene

Paralogs for LOC105375536 Gene

No data available for Paralogs for LOC105375536 Gene

Variants for LOC105375536 Gene

Sequence variations from dbSNP and Humsavar for LOC105375536 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs371877084 benign, not-provided, conflicting-interpretations-of-pathogenicity, likely-benign, Rasopathy, not specified, not provided, Noonan syndrome, Cardio-facio-cutaneous syndrome, Noonan syndrome with multiple lentigines 140,924,626(+) C/A/T upstream_transcript_variant
rs397507453 benign, Rasopathy 140,924,721(+) G/C upstream_transcript_variant
rs397507454 benign, likely-benign, Rasopathy, Noonan syndrome with multiple lentigines, Cardio-facio-cutaneous syndrome, Noonan syndrome 140,924,668(+) C/T upstream_transcript_variant
rs397507456 not-provided, conflicting-interpretations-of-pathogenicity, benign, not specified, Rasopathy 140,924,640(+) C/T upstream_transcript_variant
rs397507458 uncertain-significance, likely-benign, Rasopathy, not specified 140,924,604(+) CGGCGCCGGCGCCGGCGCCGGC/CGGCGCCGGC/CGGCGCCGGCGCCGGC/CGGCGCCGGCGCCGGCGCCGGCGCCGGC/CGGCGCCGGCGCCGGCGCCGGCGCCGGCGCCGGC upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375536 Gene

Disorders for LOC105375536 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC105375536 Gene - From: GeneCards

Disorder Aliases PubMed IDs
noonan syndrome with multiple lentigines
  • lentiginosis profusa
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC105375536: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375536 Gene

Publications for LOC105375536 Gene

No publications were found for LOC105375536 Gene.

Products for LOC105375536 Gene

Sources for LOC105375536 Gene

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