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Aliases for LOC105375520 Gene

Subcategory (RNA class) for LOC105375520 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375520 Gene

  • Uncharacterized LOC105375520 3

External Ids for LOC105375520 Gene

Previous GeneCards Identifiers for LOC105375520 Gene

  • GC07U904380

Summaries for LOC105375520 Gene

GeneCards Summary for LOC105375520 Gene

LOC105375520 (Uncharacterized LOC105375520) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375520 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375520 Gene

Genomics for LOC105375520 Gene

GeneHancer (GH) Regulatory Elements for LOC105375520 Gene

Promoters and enhancers for LOC105375520 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J134546 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 0.4 +10.3 10307 2.7 PKNOX1 ATF1 ARNT SIN3A ZNF2 IRF4 ZNF213 ZNF143 ATF7 KLF7 AKR1B15 PIR33165 GC07M134551 LOC105375520
GH07J134554 Enhancer 0.8 ENCODE dbSUPER 0.7 +4.2 4150 0.2 SCRT1 CTCF LEF1 FOXA2 RFX1 ZNF644 RAD21 FOXA1 SCRT2 TCF7 PIR31593 LOC105375520 AKR1B15
GH07J134561 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 -5.4 -5436 5.1 FOXA2 NEUROD1 SIN3A RAD21 YY1 ZNF121 ZNF366 FOS RXRA ELF1 NUP205 AKR1B15 WDR91 AGBL3 AKR1B1 ENSG00000272941 LRGUK LOC105375520 GC07M134627
GH07J134602 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -44.8 -44821 1.3 ELF3 ARID4B YY1 ZNF614 CREM MCM3 RXRA CEBPB ELF1 REST NUP205 CALD1 WDR91 BPGM GC07M134627 LOC105375520
GH07J134593 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 -35.8 -35759 2.1 FOXA2 PKNOX1 ATF1 ARNT YY1 NCOA2 TCF12 GATA2 ATF7 RXRA BPGM LOC105375520 GC07M134627
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375520 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375520 Gene

Genomic Locations for LOC105375520 Gene
chr7:134,549,248-134,558,334
(GRCh38/hg38)
Size:
9,087 bases
Orientation:
Minus strand

Genomic View for LOC105375520 Gene

Genes around LOC105375520 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375520 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375520 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375520 Gene

Proteins for LOC105375520 Gene

Post-translational modifications for LOC105375520 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375520 Gene

Domains & Families for LOC105375520 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375520 Gene

Function for LOC105375520 Gene

Phenotypes From GWAS Catalog for LOC105375520 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375520 Gene

Localization for LOC105375520 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375520 Gene

Pathways & Interactions for LOC105375520 Gene

SuperPathways for LOC105375520 Gene

No Data Available

Interacting Proteins for LOC105375520 Gene

Gene Ontology (GO) - Biological Process for LOC105375520 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375520 Gene

Drugs & Compounds for LOC105375520 Gene

No Compound Related Data Available

Transcripts for LOC105375520 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375520 Gene

No ASD Table

Relevant External Links for LOC105375520 Gene

GeneLoc Exon Structure for
LOC105375520

No data available for mRNA/cDNA for LOC105375520 Gene

Expression for LOC105375520 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375520 Gene

Orthologs for LOC105375520 Gene

No data available for Orthologs and Evolution for LOC105375520 Gene

Paralogs for LOC105375520 Gene

No data available for Paralogs for LOC105375520 Gene

Variants for LOC105375520 Gene

Sequence variations from dbSNP and Humsavar for LOC105375520 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000469036 -- 134,561,671(-) C/T upstream_transcript_variant
rs1000507347 -- 134,551,708(-) A/C intron_variant, non_coding_transcript_variant
rs1000783040 -- 134,556,647(-) T/C genic_upstream_transcript_variant, non_coding_transcript_variant
rs1000800411 -- 134,561,495(-) C/T upstream_transcript_variant
rs1000878995 -- 134,547,363(-) A/C non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375520 Gene

Disorders for LOC105375520 Gene

No disorders were found for LOC105375520 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375520 Gene

Publications for LOC105375520 Gene

No publications were found for LOC105375520 Gene.

Products for LOC105375520 Gene

Sources for LOC105375520 Gene

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