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Aliases for LOC105375505 Gene

Subcategory (RNA class) for LOC105375505 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375505 Gene

  • Uncharacterized LOC105375505 3

External Ids for LOC105375505 Gene

Previous GeneCards Identifiers for LOC105375505 Gene

  • GC07U903900

Summaries for LOC105375505 Gene

GeneCards Summary for LOC105375505 Gene

LOC105375505 (Uncharacterized LOC105375505) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375505 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375505 Gene

Genomics for LOC105375505 Gene

GeneHancer (GH) Regulatory Elements for LOC105375505 Gene

Promoters and enhancers for LOC105375505 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J130440 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 650.7 -0.1 -112 3.4 PKNOX1 ATF1 ARID4B SIN3A FEZF1 GLI4 ETS1 ZNF121 GLIS2 E2F8 CEP41 LOC105375505 MEST CPA4 GC07M130398
GH07J130428 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -10.5 -10492 5.1 SCRT1 ZFP64 EBF1 ZIC2 ZNF623 ZNF781 ZNF697 GATA3 EGR1 POLR2A MEST CPA1 CPA4 CPA5 CPA2 CEP41 LOC105375505 GC07M130398
GH07J130420 Enhancer 0.7 Ensembl ENCODE 0.3 -20.3 -20301 1.7 ZNF335 JUND JUN FOS ZNF488 ZIC2 RUNX3 GC07M130398 LOC105375505 CEP41
GH07J130416 Enhancer 0.6 Ensembl ENCODE 0.3 -23.5 -23523 3.8 MCM2 RUNX3 SP7 CPA1 CEP41 MEST CPA4 CPA2 CPA5 GC07M130398 LOC105375505
GH07J130409 Enhancer 0.6 ENCODE dbSUPER 0.3 -32.0 -32011 1.6 HLF CBFA2T3 CPA5 CPA1 MEST CEP41 CPA4 KLHDC10 CPA2 GC07M130398 LOC105375505
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375505 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375505 Gene

Genomic Locations for LOC105375505 Gene
chr7:130,441,976-130,443,226
(GRCh38/hg38)
Size:
1,251 bases
Orientation:
Plus strand

Genomic View for LOC105375505 Gene

Genes around LOC105375505 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375505 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375505 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375505 Gene

Proteins for LOC105375505 Gene

Post-translational modifications for LOC105375505 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375505 Gene

Domains & Families for LOC105375505 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375505 Gene

Function for LOC105375505 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375505 Gene

Localization for LOC105375505 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375505 Gene

Pathways & Interactions for LOC105375505 Gene

SuperPathways for LOC105375505 Gene

No Data Available

Interacting Proteins for LOC105375505 Gene

Gene Ontology (GO) - Biological Process for LOC105375505 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375505 Gene

Drugs & Compounds for LOC105375505 Gene

No Compound Related Data Available

Transcripts for LOC105375505 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375505 Gene

No ASD Table

Relevant External Links for LOC105375505 Gene

GeneLoc Exon Structure for
LOC105375505

No data available for mRNA/cDNA for LOC105375505 Gene

Expression for LOC105375505 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375505 Gene

Orthologs for LOC105375505 Gene

No data available for Orthologs and Evolution for LOC105375505 Gene

Paralogs for LOC105375505 Gene

No data available for Paralogs for LOC105375505 Gene

Variants for LOC105375505 Gene

Sequence variations from dbSNP and Humsavar for LOC105375505 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs10230435 likely-benign, Joubert syndrome 130,441,110(+) C/T upstream_transcript_variant
rs10230670 likely-benign, uncertain-significance, Joubert syndrome 130,441,144(+) G/A/T upstream_transcript_variant
rs2287371 benign, not specified, Joubert syndrome 130,440,971(+) T/G upstream_transcript_variant
rs542293061 uncertain-significance, Joubert syndrome 130,441,209(+) C/T upstream_transcript_variant
rs886062002 uncertain-significance, Joubert syndrome 130,441,007(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375505 Gene

Disorders for LOC105375505 Gene

No disorders were found for LOC105375505 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375505 Gene

Publications for LOC105375505 Gene

No publications were found for LOC105375505 Gene.

Products for LOC105375505 Gene

Sources for LOC105375505 Gene

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