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Aliases for LOC105375478 Gene

Subcategory (RNA class) for LOC105375478 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375478 Gene

  • Uncharacterized LOC105375478 3

External Ids for LOC105375478 Gene

Previous GeneCards Identifiers for LOC105375478 Gene

  • GC07U904213

Summaries for LOC105375478 Gene

GeneCards Summary for LOC105375478 Gene

LOC105375478 (Uncharacterized LOC105375478) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375478 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375478 Gene

Genomics for LOC105375478 Gene

GeneHancer (GH) Regulatory Elements for LOC105375478 Gene

Promoters and enhancers for LOC105375478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J121503 Enhancer 0.9 Ensembl ENCODE 650.7 +0.3 341 1.6 FOXA2 JUN ASH1L KLF5 RFX5 ZNF280A CBX5 POLR2A FOXK2 ZNF143 LOC105375478 FAM3C RPL18P4
GH07J121528 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -25.1 -25114 4.1 HDGF PKNOX1 SMAD1 YBX1 IRF4 CBX5 ZNF207 ZNF143 ATF7 FOS PTPRZ1 LOC105375478 ENSG00000227743
GH07J121543 Enhancer 1.1 Ensembl ENCODE 0.3 -40.3 -40346 4.2 CLOCK ATF1 IRF4 ARID2 ZNF143 ATF7 FOS RUNX3 JUNB REST ING3 FAM3C CYCSP19 WNT16 LOC105375478 ENSG00000227743
GH07J121511 Promoter 0.8 EPDnew 0.4 -6.1 -6055 0.1 ZNF280A CBX5 ZNF143 ZBTB33 KLF5 TRIM28 SETDB1 FAM3C LOC105375478 ENSG00000227743
GH07J121519 Enhancer 0.6 ENCODE 0.4 -15.2 -15195 1.2 ZNF639 ATF1 BACH1 EBF1 ELF1 GTF2A2 GATA3 ATF7 PRDM10 LOC105375478 ENSG00000227743
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375478 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375478 Gene

Genomic Locations for LOC105375478 Gene
chr7:121,486,317-121,505,159
(GRCh38/hg38)
Size:
18,843 bases
Orientation:
Minus strand

Genomic View for LOC105375478 Gene

Genes around LOC105375478 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375478 Gene

Proteins for LOC105375478 Gene

Post-translational modifications for LOC105375478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375478 Gene

Domains & Families for LOC105375478 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375478 Gene

Function for LOC105375478 Gene

Phenotypes From GWAS Catalog for LOC105375478 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375478 Gene

Localization for LOC105375478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375478 Gene

Pathways & Interactions for LOC105375478 Gene

SuperPathways for LOC105375478 Gene

No Data Available

Interacting Proteins for LOC105375478 Gene

Gene Ontology (GO) - Biological Process for LOC105375478 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375478 Gene

Drugs & Compounds for LOC105375478 Gene

No Compound Related Data Available

Transcripts for LOC105375478 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375478 Gene

No ASD Table

Relevant External Links for LOC105375478 Gene

GeneLoc Exon Structure for
LOC105375478

No data available for mRNA/cDNA for LOC105375478 Gene

Expression for LOC105375478 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375478 Gene

Orthologs for LOC105375478 Gene

No data available for Orthologs and Evolution for LOC105375478 Gene

Paralogs for LOC105375478 Gene

No data available for Paralogs for LOC105375478 Gene

Variants for LOC105375478 Gene

Sequence variations from dbSNP and Humsavar for LOC105375478 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000025114 -- 121,499,330(-) C/T intron_variant
rs1000138452 -- 121,501,635(-) T/C intron_variant
rs1000281032 -- 121,501,858(-) C/T intron_variant
rs1000787213 -- 121,489,430(-) G/T intron_variant
rs1000984288 -- 121,494,201(-) G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375478 Gene

Disorders for LOC105375478 Gene

No disorders were found for LOC105375478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375478 Gene

Publications for LOC105375478 Gene

No publications were found for LOC105375478 Gene.

Products for LOC105375478 Gene

Sources for LOC105375478 Gene

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