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Aliases for LOC105375448 Gene

Subcategory (RNA class) for LOC105375448 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375448 Gene

  • Uncharacterized LOC105375448 3
  • AC005487.1 5

External Ids for LOC105375448 Gene

Previous GeneCards Identifiers for LOC105375448 Gene

  • GC07U903885

Summaries for LOC105375448 Gene

GeneCards Summary for LOC105375448 Gene

LOC105375448 (Uncharacterized LOC105375448) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375448 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375448 Gene

Genomics for LOC105375448 Gene

GeneHancer (GH) Regulatory Elements for LOC105375448 Gene

Promoters and enhancers for LOC105375448 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J108567 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 -7.6 -7581 4.5 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC THAP5 PNPLA8 DNAJB9 ENSG00000272854 CBLL1 LOC105375448
GH07J108581 Enhancer 0.8 Ensembl ENCODE 0.7 +4.9 4894 1.1 SMARCE1 STAT1 TEAD1 DPF2 FOXA1 TEAD3 SP1 ZNF217 GATA3 BCL6B THAP5 PNPLA8 LOC105375448 LOC100419644
GH07J108589 Enhancer 0.5 ENCODE 0.4 +13.0 13025 1.9 PKNOX1 BHLHE40 FEZF1 CUX1 THAP5 PNPLA8 LOC105375448 LOC100419644
GH07J108611 Enhancer 0.6 ENCODE 0.3 +34.0 34034 0.2 SMARCE1 SMARCA5 NFIB NEUROD1 DPF2 ELF1 FOXA1 ZNF217 GATA3 JUND DNAJB9 THAP5 PNPLA8 LOC105375448 LOC100419644
GH07J108613 Enhancer 0.6 ENCODE 0.3 +35.9 35934 0.2 CTCF ZNF654 REST ZBTB40 RAD21 RFX5 KLF16 SCRT2 SMC3 ZNF143 LOC105375448 LOC100419644
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375448 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375448 Gene

Genomic Locations for LOC105375448 Gene
chr7:108,577,418-108,614,273
(GRCh38/hg38)
Size:
36,856 bases
Orientation:
Plus strand
chr7:108,238,819-108,254,711
(GRCh37/hg19)
Size:
15,893 bases
Orientation:
Plus strand

Genomic View for LOC105375448 Gene

Genes around LOC105375448 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375448 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375448 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375448 Gene

Proteins for LOC105375448 Gene

Post-translational modifications for LOC105375448 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375448 Gene

Domains & Families for LOC105375448 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375448 Gene

Function for LOC105375448 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375448 Gene

Localization for LOC105375448 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375448 Gene

Pathways & Interactions for LOC105375448 Gene

SuperPathways for LOC105375448 Gene

No Data Available

Interacting Proteins for LOC105375448 Gene

Gene Ontology (GO) - Biological Process for LOC105375448 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375448 Gene

Drugs & Compounds for LOC105375448 Gene

No Compound Related Data Available

Transcripts for LOC105375448 Gene

mRNA/cDNA for LOC105375448 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375448 Gene

No ASD Table

Relevant External Links for LOC105375448 Gene

GeneLoc Exon Structure for
LOC105375448

Expression for LOC105375448 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375448 Gene

Orthologs for LOC105375448 Gene

Evolution for LOC105375448 Gene

ENSEMBL:
Gene Tree for LOC105375448 (if available)
TreeFam:
Gene Tree for LOC105375448 (if available)

No data available for Orthologs for LOC105375448 Gene

Paralogs for LOC105375448 Gene

No data available for Paralogs for LOC105375448 Gene

Variants for LOC105375448 Gene

Sequence variations from dbSNP and Humsavar for LOC105375448 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000047264 -- 108,587,619(+) T/A genic_upstream_transcript_variant, intron_variant
rs1000074940 -- 108,580,157(+) C/T genic_upstream_transcript_variant, intron_variant
rs1000091859 -- 108,605,656(+) A/G intron_variant, non_coding_transcript_variant
rs1000195843 -- 108,585,152(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000255437 -- 108,591,450(+) G/C genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375448 Gene

Disorders for LOC105375448 Gene

No disorders were found for LOC105375448 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375448 Gene

Publications for LOC105375448 Gene

No publications were found for LOC105375448 Gene.

Products for LOC105375448 Gene

Sources for LOC105375448 Gene

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