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Aliases for LOC105375440 Gene

Subcategory (RNA class) for LOC105375440 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375440 Gene

  • Uncharacterized LOC105375440 3

External Ids for LOC105375440 Gene

Previous GeneCards Identifiers for LOC105375440 Gene

  • GC07U904309

Summaries for LOC105375440 Gene

GeneCards Summary for LOC105375440 Gene

LOC105375440 (Uncharacterized LOC105375440) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375440 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375440 Gene

Genomics for LOC105375440 Gene

GeneHancer (GH) Regulatory Elements for LOC105375440 Gene

Promoters and enhancers for LOC105375440 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J106622 Enhancer 0.7 ENCODE 650.7 -0.9 -874 2.2 PKNOX1 YY1 ZNF316 TRIM24 FOSL2 FOS MAFK RXRA MAFG ZEB2 LOC105375440 CCDC71L CTB-30L5.1 ENSG00000243797
GH07J106625 Enhancer 0.8 ENCODE 0.7 +2.6 2591 1.8 USF1 BACH1 E4F1 CTBP1 ZNF316 MTA3 VEZF1 KDM4B SMARCE1 ZNF740 CCDC71L LOC105375440 ENSG00000243797
GH07J106657 Promoter/Enhancer 1.6 Ensembl ENCODE 0.3 +35.5 35497 5 HDGF PKNOX1 SMAD1 ARNT SIN3A ZNF2 ZBTB7B YY1 POLR2B ZNF766 CCDC71L ATXN7L1 BANF1P5 LOC105375440 ENSG00000243797
GH07J106640 Enhancer 0.7 FANTOM5 0.4 +16.5 16493 0.3 FOXA2 RXRA MAX REST RAD21 FOXA1 YY1 SP1 JUND ATF3 CCDC71L NAMPT PIK3CG LOC105375440 ENSG00000243797
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375440 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375440 Gene

Genomic Locations for LOC105375440 Gene
chr7:106,624,104-106,628,849
(GRCh38/hg38)
Size:
4,746 bases
Orientation:
Plus strand

Genomic View for LOC105375440 Gene

Genes around LOC105375440 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375440 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375440 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375440 Gene

Proteins for LOC105375440 Gene

Post-translational modifications for LOC105375440 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375440 Gene

Domains & Families for LOC105375440 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375440 Gene

Function for LOC105375440 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375440 Gene

Localization for LOC105375440 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375440 Gene

Pathways & Interactions for LOC105375440 Gene

SuperPathways for LOC105375440 Gene

No Data Available

Interacting Proteins for LOC105375440 Gene

Gene Ontology (GO) - Biological Process for LOC105375440 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375440 Gene

Drugs & Compounds for LOC105375440 Gene

No Compound Related Data Available

Transcripts for LOC105375440 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375440 Gene

No ASD Table

Relevant External Links for LOC105375440 Gene

GeneLoc Exon Structure for
LOC105375440

No data available for mRNA/cDNA for LOC105375440 Gene

Expression for LOC105375440 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375440 Gene

Orthologs for LOC105375440 Gene

No data available for Orthologs and Evolution for LOC105375440 Gene

Paralogs for LOC105375440 Gene

No data available for Paralogs for LOC105375440 Gene

Variants for LOC105375440 Gene

Sequence variations from dbSNP and Humsavar for LOC105375440 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000025252 -- 106,624,839(+) GTGGGTGGGTGG/GTGGGTGGGTGGGTGGGTGG intron_variant
rs1000547483 -- 106,628,047(+) C/T intron_variant
rs1000601272 -- 106,627,829(+) C/T intron_variant
rs1000830826 -- 106,622,363(+) C/T upstream_transcript_variant
rs1002011112 -- 106,622,219(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375440 Gene

Disorders for LOC105375440 Gene

No disorders were found for LOC105375440 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375440 Gene

Publications for LOC105375440 Gene

No publications were found for LOC105375440 Gene.

Products for LOC105375440 Gene

Sources for LOC105375440 Gene

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