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Aliases for LOC105375405 Gene

Subcategory (RNA class) for LOC105375405 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375405 Gene

  • Uncharacterized LOC105375405 3
  • AC002429.2 5

External Ids for LOC105375405 Gene

Previous GeneCards Identifiers for LOC105375405 Gene

  • GC07U904302

Summaries for LOC105375405 Gene

GeneCards Summary for LOC105375405 Gene

LOC105375405 (Uncharacterized LOC105375405) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375405 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375405 Gene

Genomics for LOC105375405 Gene

GeneHancer (GH) Regulatory Elements for LOC105375405 Gene

Promoters and enhancers for LOC105375405 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J095212 Enhancer 0.4 Ensembl ENCODE 650.7 +1.1 1111 1.9 LOC105375405 PON1 RNU4-16P PPP1R9A
GH07J095240 Enhancer 0.4 ENCODE 10.7 -26.1 -26138 0.7 SP1 RXRA HNF4A LOC105375405 ENSG00000273138 GC07M095243 PPP1R9A
GH07J095238 Enhancer 0.2 ENCODE 11.4 -23.7 -23696 0.5 LOC105375405 GC07M095243 PPP1R9A
GH07J095198 Enhancer 0.5 ENCODE 0.4 +16.0 16045 1.6 CTCF POLR2A RCOR1 CHD2 RNU4-16P PON1 PON2 LOC105375405 PPP1R9A
GH07J095205 Enhancer 0.4 ENCODE 0.4 +8.9 8899 1 JUND JUN FOSL2 PPP1R9A LOC105375405 RNU4-16P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375405 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375405 Gene

Genomic Locations for LOC105375405 Gene
chr7:95,035,452-95,214,946
(GRCh38/hg38)
Size:
179,495 bases
Orientation:
Minus strand
chr7:94,784,025-94,843,644
(GRCh37/hg19)
Size:
59,620 bases
Orientation:
Minus strand

Genomic View for LOC105375405 Gene

Genes around LOC105375405 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375405 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375405 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375405 Gene

Proteins for LOC105375405 Gene

Post-translational modifications for LOC105375405 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375405 Gene

Domains & Families for LOC105375405 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375405 Gene

Function for LOC105375405 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375405 Gene

Localization for LOC105375405 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375405 Gene

Pathways & Interactions for LOC105375405 Gene

SuperPathways for LOC105375405 Gene

No Data Available

Interacting Proteins for LOC105375405 Gene

Gene Ontology (GO) - Biological Process for LOC105375405 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375405 Gene

Drugs & Compounds for LOC105375405 Gene

No Compound Related Data Available

Transcripts for LOC105375405 Gene

mRNA/cDNA for LOC105375405 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375405 Gene

No ASD Table

Relevant External Links for LOC105375405 Gene

GeneLoc Exon Structure for
LOC105375405

Expression for LOC105375405 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375405 Gene

Orthologs for LOC105375405 Gene

Evolution for LOC105375405 Gene

ENSEMBL:
Gene Tree for LOC105375405 (if available)
TreeFam:
Gene Tree for LOC105375405 (if available)

No data available for Orthologs for LOC105375405 Gene

Paralogs for LOC105375405 Gene

No data available for Paralogs for LOC105375405 Gene

Variants for LOC105375405 Gene

Sequence variations from dbSNP and Humsavar for LOC105375405 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000002604 -- 95,115,134(-) A/G intron_variant
rs1000018622 -- 95,078,792(-) C/G genic_downstream_transcript_variant, intron_variant
rs1000018837 -- 95,208,800(-) TT/T genic_upstream_transcript_variant, intron_variant
rs1000019193 -- 95,148,801(-) T/C intron_variant
rs1000069818 -- 95,165,206(-) T/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375405 Gene

Disorders for LOC105375405 Gene

Additional Disease Information for LOC105375405

No disorders were found for LOC105375405 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105375405 Gene

Publications for LOC105375405 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC105375405 Gene

Sources for LOC105375405 Gene

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