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Aliases for LOC105375401 Gene

Subcategory (RNA class) for LOC105375401 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375401 Gene

  • Uncharacterized LOC105375401 3
  • AC002076.1 5

External Ids for LOC105375401 Gene

Previous GeneCards Identifiers for LOC105375401 Gene

  • GC07U904339

Summaries for LOC105375401 Gene

GeneCards Summary for LOC105375401 Gene

LOC105375401 (Uncharacterized LOC105375401) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375401 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375401 Gene

Genomics for LOC105375401 Gene

GeneHancer (GH) Regulatory Elements for LOC105375401 Gene

Promoters and enhancers for LOC105375401 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J093889 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 650.7 -0.4 -400 2.1 KLF17 SIN3A ZNF335 GLIS2 EGR1 ZNF366 SCRT2 RCOR1 FOS EGR2 TFPI2 LOC105375401 GNG11 GC07M093797 GNGT1
GH07J093890 Enhancer 0.3 Ensembl 650.7 -1.7 -1743 0.2 FOSL2 TFPI2 LOC105375401 GNG11 GC07M093797 GNGT1
GH07J093919 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 11 +31.5 31511 4.9 PKNOX1 SIN3A GLI4 ZNF2 YY1 GLIS2 KLF7 REST SMARCB1 ZNF610 GNG11 TFPI2 LOC105375401 LOC105375402
GH07J094055 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +166.4 166392 2.8 JUN MAX BACH1 ZBTB40 ZNF316 POLR2A FOS NFE2 MAFK NFE2L2 BET1 GNG11 LOC105375401 TFPI2 ENSG00000236938 ENSG00000236453
GH07J093913 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.5 +23.8 23752 2.2 ELK4 JUN MAFG CEBPB EP300 RFX5 SP1 GATA3 JUND ZNF316 ENSG00000278388 TFPI2 LOC105375401 GNG11 LOC105375402
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375401 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375401 Gene

Genomic Locations for LOC105375401 Gene
chr7:93,890,844-93,893,601
(GRCh38/hg38)
Size:
2,758 bases
Orientation:
Plus strand
chr7:93,520,225-93,522,913
(GRCh37/hg19)
Size:
2,689 bases
Orientation:
Plus strand

Genomic View for LOC105375401 Gene

Genes around LOC105375401 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375401 Gene

Proteins for LOC105375401 Gene

Post-translational modifications for LOC105375401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375401 Gene

Domains & Families for LOC105375401 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375401 Gene

Function for LOC105375401 Gene

Phenotypes From GWAS Catalog for LOC105375401 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375401 Gene

Localization for LOC105375401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375401 Gene

Pathways & Interactions for LOC105375401 Gene

SuperPathways for LOC105375401 Gene

No Data Available

Interacting Proteins for LOC105375401 Gene

Gene Ontology (GO) - Biological Process for LOC105375401 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375401 Gene

Drugs & Compounds for LOC105375401 Gene

No Compound Related Data Available

Transcripts for LOC105375401 Gene

mRNA/cDNA for LOC105375401 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375401 Gene

No ASD Table

Relevant External Links for LOC105375401 Gene

GeneLoc Exon Structure for
LOC105375401

Expression for LOC105375401 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375401 Gene

Orthologs for LOC105375401 Gene

Evolution for LOC105375401 Gene

ENSEMBL:
Gene Tree for LOC105375401 (if available)
TreeFam:
Gene Tree for LOC105375401 (if available)

No data available for Orthologs for LOC105375401 Gene

Paralogs for LOC105375401 Gene

No data available for Paralogs for LOC105375401 Gene

Variants for LOC105375401 Gene

Sequence variations from dbSNP and Humsavar for LOC105375401 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000218731 -- 93,888,916(+) T/C upstream_transcript_variant
rs1000512824 -- 93,890,249(+) G/T upstream_transcript_variant
rs1000586619 -- 93,889,939(+) T/C upstream_transcript_variant
rs1000956366 -- 93,890,390(+) A/G upstream_transcript_variant
rs1002082418 -- 93,890,455(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375401 Gene

Disorders for LOC105375401 Gene

Additional Disease Information for LOC105375401

No disorders were found for LOC105375401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105375401 Gene

Publications for LOC105375401 Gene

No publications were found for LOC105375401 Gene.

Products for LOC105375401 Gene

Sources for LOC105375401 Gene

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