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Aliases for LOC105375238 Gene

Subcategory (RNA class) for LOC105375238 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375238 Gene

  • Uncharacterized LOC105375238 3

External Ids for LOC105375238 Gene

Previous GeneCards Identifiers for LOC105375238 Gene

  • GC07U904369

Summaries for LOC105375238 Gene

GeneCards Summary for LOC105375238 Gene

LOC105375238 (Uncharacterized LOC105375238) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375238 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375238 Gene

Genomics for LOC105375238 Gene

GeneHancer (GH) Regulatory Elements for LOC105375238 Gene

Promoters and enhancers for LOC105375238 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J039465 Enhancer 0.8 ENCODE 0.4 +9.3 9284 0.2 PKNOX1 BATF IRF4 RAD21 YY1 ARID2 ZNF143 RUNX3 MIXL1 ZNF654 VPS41 LOC105375240 YAE1 FAM183BP LOC105375238 POU6F2-AS1 POU6F2
GH07J039413 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.2 +60.0 59985 1.3 INSM2 SIN3A BMI1 ZNF2 KLF5 ZNF335 GLIS2 ZNF213 ZSCAN5C ZNF143 POU6F2-AS1 POU6F2 LOC105375238
GH07J039461 Enhancer 0.6 UCNEbase 0.4 +12.7 12741 0.4 CEBPB FOXP2 CEBPG LOC105375238 POU6F2-AS1 POU6F2
GH07J039458 Enhancer 0.5 Ensembl 0.4 +16.0 15950 0.2 L3MBTL2 GABPB1 EHMT2 ELF1 MGA GABPA POU6F2-AS1 POU6F2 YAE1 LOC105375240 LOC105375238
GH07J039406 Enhancer 0.7 Ensembl 0.2 +68.0 67950 0.2 MAX EBF1 ZNF644 RAD21 YY1 NR2F6 IKZF2 MIXL1 SMARCA5 ZNF687 POU6F2-AS1 LOC105375238 POU6F2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375238 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375238 Gene

Genomic Locations for LOC105375238 Gene
chr7:39,416,277-39,474,451
(GRCh38/hg38)
Size:
58,175 bases
Orientation:
Minus strand

Genomic View for LOC105375238 Gene

Genes around LOC105375238 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375238 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375238 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375238 Gene

Proteins for LOC105375238 Gene

Post-translational modifications for LOC105375238 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375238 Gene

Domains & Families for LOC105375238 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375238 Gene

Function for LOC105375238 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375238 Gene

Localization for LOC105375238 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375238 Gene

Pathways & Interactions for LOC105375238 Gene

SuperPathways for LOC105375238 Gene

No Data Available

Interacting Proteins for LOC105375238 Gene

Gene Ontology (GO) - Biological Process for LOC105375238 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375238 Gene

Drugs & Compounds for LOC105375238 Gene

No Compound Related Data Available

Transcripts for LOC105375238 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375238 Gene

No ASD Table

Relevant External Links for LOC105375238 Gene

GeneLoc Exon Structure for
LOC105375238

No data available for mRNA/cDNA for LOC105375238 Gene

Expression for LOC105375238 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375238 Gene

Orthologs for LOC105375238 Gene

No data available for Orthologs and Evolution for LOC105375238 Gene

Paralogs for LOC105375238 Gene

No data available for Paralogs for LOC105375238 Gene

Variants for LOC105375238 Gene

Sequence variations from dbSNP and Humsavar for LOC105375238 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000061709 -- 39,444,782(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000104392 -- 39,447,490(-) C/A/T genic_downstream_transcript_variant, intron_variant
rs1000223280 -- 39,420,565(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000353631 -- 39,426,937(-) T/G genic_downstream_transcript_variant, intron_variant
rs1000363513 -- 39,427,186(-) T/C genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375238 Gene

Disorders for LOC105375238 Gene

No disorders were found for LOC105375238 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375238 Gene

Publications for LOC105375238 Gene

No publications were found for LOC105375238 Gene.

Products for LOC105375238 Gene

Sources for LOC105375238 Gene

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