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Aliases for LOC105375215 Gene

Subcategory (RNA class) for LOC105375215 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105375215 Gene

  • Uncharacterized LOC105375215 3
  • AC007285.1 5

External Ids for LOC105375215 Gene

Previous GeneCards Identifiers for LOC105375215 Gene

  • GC07U904143

Summaries for LOC105375215 Gene

GeneCards Summary for LOC105375215 Gene

LOC105375215 (Uncharacterized LOC105375215) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375215 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375215 Gene

Genomics for LOC105375215 Gene

GeneHancer (GH) Regulatory Elements for LOC105375215 Gene

Promoters and enhancers for LOC105375215 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I029986 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +1.0 1037 3.7 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 LOC105375215 PIR35583 SCRN1 MTURN
GH07I030025 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.2 +40.2 40194 5.3 PKNOX1 FOXA2 SMAD1 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZBTB7B PLEKHA8 FKBP14 SCRN1 ENSG00000226874 ENSG00000263683 LOC105375215 DKFZP586I1420 ENSG00000231519
GH07I030224 Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.8 +237.9 237901 3 PKNOX1 ARID4B BATF IRF4 RAD21 YY1 ZNF143 ATF7 ETV6 FOS LOC105375215 SCRN1 ZNRF2 GC07M030247 LOC105375217
GH07I029956 Enhancer 0.9 FANTOM5 Ensembl ENCODE 12.6 -31.5 -31474 0.5 USF1 POLR2A MAX MYC RUNX3 LOC105375215 SCRN1 PLEKHA8 FKBP14 ENSG00000238906 ENSG00000231519 PIR51591 PIR47202
GH07I030254 Enhancer 0.9 ENCODE 9.6 +267.4 267434 1.8 ELF3 FOXA2 ARID4B DMAP1 RAD21 THRB ZSCAN9 RARA ETS1 YY1 ZNRF2 MIR550A1 NOD1 SCRN1 LOC105375215 GC07M030247 LOC105375218
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375215 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375215 Gene

Genomic Locations for LOC105375215 Gene
chr7:29,987,806-30,026,305
(GRCh38/hg38)
Size:
38,500 bases
Orientation:
Plus strand
chr7:30,028,216-30,065,276
(GRCh37/hg19)

Genomic View for LOC105375215 Gene

Genes around LOC105375215 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375215 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375215 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375215 Gene

Proteins for LOC105375215 Gene

Post-translational modifications for LOC105375215 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375215 Gene

Domains & Families for LOC105375215 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375215 Gene

Function for LOC105375215 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375215 Gene

Localization for LOC105375215 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375215 Gene

Pathways & Interactions for LOC105375215 Gene

SuperPathways for LOC105375215 Gene

No Data Available

Interacting Proteins for LOC105375215 Gene

Gene Ontology (GO) - Biological Process for LOC105375215 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375215 Gene

Drugs & Compounds for LOC105375215 Gene

No Compound Related Data Available

Transcripts for LOC105375215 Gene

mRNA/cDNA for LOC105375215 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375215 Gene

No ASD Table

Relevant External Links for LOC105375215 Gene

GeneLoc Exon Structure for
LOC105375215

Expression for LOC105375215 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375215 Gene

Orthologs for LOC105375215 Gene

Evolution for LOC105375215 Gene

ENSEMBL:
Gene Tree for LOC105375215 (if available)
TreeFam:
Gene Tree for LOC105375215 (if available)

No data available for Orthologs for LOC105375215 Gene

Paralogs for LOC105375215 Gene

No data available for Paralogs for LOC105375215 Gene

Variants for LOC105375215 Gene

Sequence variations from dbSNP and Humsavar for LOC105375215 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs112905680 benign, Ehlers-Danlos syndrome with progressive kyphoscoliosis, myopathy, and hearing loss 30,026,475(+) G/C downstream_transcript_variant
rs142474407 benign, Ehlers-Danlos syndrome with progressive kyphoscoliosis, myopathy, and hearing loss 30,014,876(+) C/T intron_variant
rs143268242 likely-benign, benign, not specified, Ehlers-Danlos syndrome with progressive kyphoscoliosis, myopathy, and hearing loss 30,019,098(+) C/G intron_variant
rs147665999 uncertain-significance, Ehlers-Danlos syndrome with progressive kyphoscoliosis, myopathy, and hearing loss 30,014,859(+) T/G intron_variant
rs17150692 benign, not specified, Ehlers-Danlos syndrome with progressive kyphoscoliosis, myopathy, and hearing loss 30,026,344(+) G/A downstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375215 Gene

Disorders for LOC105375215 Gene

No disorders were found for LOC105375215 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375215 Gene

Publications for LOC105375215 Gene

No publications were found for LOC105375215 Gene.

Products for LOC105375215 Gene

Sources for LOC105375215 Gene

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