Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105375172 Gene

Subcategory (RNA class) for LOC105375172 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375172 Gene

  • Uncharacterized LOC105375172 3
  • AC019117.1 5

External Ids for LOC105375172 Gene

Previous GeneCards Identifiers for LOC105375172 Gene

  • GC07U903985
  • GC07M017430

Summaries for LOC105375172 Gene

GeneCards Summary for LOC105375172 Gene

LOC105375172 (Uncharacterized LOC105375172) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375172 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375172 Gene

Genomics for LOC105375172 Gene

GeneHancer (GH) Regulatory Elements for LOC105375172 Gene

Promoters and enhancers for LOC105375172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J017555 Enhancer 1.1 Ensembl ENCODE dbSUPER 662.4 +0.2 185 5.6 NFIB ZNF335 CTBP1 GATA3 ATF7 FOSL2 FOS TCF7L2 REST ATF2 LOC105375172 LOC101927630 ENSG00000236318 ENSG00000199473 LOC101927609 AHR KCCAT333
GH07J017297 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.8 +258.5 258519 6.7 ARID4B SIN3A ZNF48 YY1 GLIS2 ZNF143 ATF7 RXRA ZHX2 REST LOC101927609 ENSG00000283321 AHR LOC105375172 LOC105375171
GH07J017598 Enhancer 1.1 Ensembl ENCODE 5.8 -41.3 -41296 3.8 FOXA2 SIN3A FEZF1 ZNF2 GLIS2 ZNF213 FOS SP3 REST TSHZ1 ENSG00000236318 ENSG00000199473 LOC105375172 LOC101927630 ENSG00000228675
GH07J017650 Enhancer 1 Ensembl ENCODE dbSUPER 6.3 -93.0 -92992 2.1 CTCF STAT1 MAFG SP1 JUND STAT3 FOS FOSL2 NFE2 LOC101927609 AHR LOC105375172 SNX13 ENSG00000228675 LOC101927630
GH07J017368 Enhancer 1.3 FANTOM5 Ensembl ENCODE 4.8 +187.9 187936 4.3 ELF3 ATF1 NFIB INSM2 SIN3A RAD21 BRCA1 ZNF366 SMARCC2 RCOR1 LOC105375171 LOC105375172 AHR ENSG00000283321 LOC101927609
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375172 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375172 Gene

Genomic Locations for LOC105375172 Gene
chr7:17,405,479-17,558,909
(GRCh38/hg38)
Size:
153,431 bases
Orientation:
Minus strand
chr7:17,474,101-17,500,296
(GRCh37/hg19)
Size:
26,196 bases
Orientation:
Minus strand

Genomic View for LOC105375172 Gene

Genes around LOC105375172 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375172 Gene

Proteins for LOC105375172 Gene

Post-translational modifications for LOC105375172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375172 Gene

Domains & Families for LOC105375172 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375172 Gene

Function for LOC105375172 Gene

Phenotypes From GWAS Catalog for LOC105375172 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375172 Gene

Localization for LOC105375172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375172 Gene

Pathways & Interactions for LOC105375172 Gene

SuperPathways for LOC105375172 Gene

No Data Available

Interacting Proteins for LOC105375172 Gene

Gene Ontology (GO) - Biological Process for LOC105375172 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375172 Gene

Drugs & Compounds for LOC105375172 Gene

No Compound Related Data Available

Transcripts for LOC105375172 Gene

mRNA/cDNA for LOC105375172 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375172 Gene

No ASD Table

Relevant External Links for LOC105375172 Gene

GeneLoc Exon Structure for
LOC105375172

Expression for LOC105375172 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375172 Gene

Orthologs for LOC105375172 Gene

Evolution for LOC105375172 Gene

ENSEMBL:
Gene Tree for LOC105375172 (if available)
TreeFam:
Gene Tree for LOC105375172 (if available)

No data available for Orthologs for LOC105375172 Gene

Paralogs for LOC105375172 Gene

No data available for Paralogs for LOC105375172 Gene

Variants for LOC105375172 Gene

Sequence variations from dbSNP and Humsavar for LOC105375172 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000045262 -- 17,447,672(-) C/G intron_variant
rs1000234660 -- 17,455,893(-) C/A/G intron_variant
rs1000244459 -- 17,456,136(-) C/T intron_variant
rs1000402971 -- 17,433,481(-) T/A non_coding_transcript_variant
rs1000410004 -- 17,461,525(-) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375172 Gene

Disorders for LOC105375172 Gene

Additional Disease Information for LOC105375172

No disorders were found for LOC105375172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105375172 Gene

Publications for LOC105375172 Gene

No publications were found for LOC105375172 Gene.

Products for LOC105375172 Gene

Sources for LOC105375172 Gene

Content
Loading form....