Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105375171 Gene

Subcategory (RNA class) for LOC105375171 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105375171 Gene

  • Uncharacterized LOC105375171 3

External Ids for LOC105375171 Gene

Previous GeneCards Identifiers for LOC105375171 Gene

  • GC07U904356

Summaries for LOC105375171 Gene

GeneCards Summary for LOC105375171 Gene

LOC105375171 (Uncharacterized LOC105375171) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375171 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375171 Gene

Genomics for LOC105375171 Gene

GeneHancer (GH) Regulatory Elements for LOC105375171 Gene

Promoters and enhancers for LOC105375171 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I017368 Enhancer 1.3 FANTOM5 Ensembl ENCODE 550.8 +0.9 873 4.3 ELF3 ATF1 NFIB INSM2 RAD21 BRCA1 ZNF366 SMARCC2 RCOR1 ATF7 LOC105375171 LOC101927630 AHR ENSG00000283321 LOC101927609
GH07I017297 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.2 +71.5 71456 6.7 ARID4B SIN3A ZNF48 YY1 GLIS2 ZNF143 ATF7 ZHX2 REST ZNF518A LOC101927609 AHR ENSG00000283321 LOC101927630 LOC105375171
GH07I017304 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.2 +65.5 65532 4.4 FOXA2 NFIB INSM2 SIN3A MZF1 BATF RAD21 RARA YY1 ZNF366 LOC101927609 ENSG00000283321 AHR LOC105375171
GH07I017311 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.2 +59.2 59241 1.9 USF1 JUN MAX POU5F1 ZNF600 ENSG00000236318 ENSG00000199473 ENSG00000283321 AHR LOC101927609 LOC105375171
GH07I017318 Enhancer 0.6 ENCODE dbSUPER 0.2 +53.5 53454 0.2 SP1 FOSL2 AHR LOC101927609 ENSG00000283321 LOC105375171
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375171 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375171 Gene

Genomic Locations for LOC105375171 Gene
chr7:17,362,445-17,371,846
(GRCh38/hg38)
Size:
9,402 bases
Orientation:
Minus strand

Genomic View for LOC105375171 Gene

Genes around LOC105375171 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375171 Gene

Proteins for LOC105375171 Gene

Post-translational modifications for LOC105375171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375171 Gene

Domains & Families for LOC105375171 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375171 Gene

Function for LOC105375171 Gene

Phenotypes From GWAS Catalog for LOC105375171 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375171 Gene

Localization for LOC105375171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375171 Gene

Pathways & Interactions for LOC105375171 Gene

SuperPathways for LOC105375171 Gene

No Data Available

Interacting Proteins for LOC105375171 Gene

Gene Ontology (GO) - Biological Process for LOC105375171 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375171 Gene

Drugs & Compounds for LOC105375171 Gene

No Compound Related Data Available

Transcripts for LOC105375171 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375171 Gene

No ASD Table

Relevant External Links for LOC105375171 Gene

GeneLoc Exon Structure for
LOC105375171

No data available for mRNA/cDNA for LOC105375171 Gene

Expression for LOC105375171 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375171 Gene

Orthologs for LOC105375171 Gene

No data available for Orthologs and Evolution for LOC105375171 Gene

Paralogs for LOC105375171 Gene

No data available for Paralogs for LOC105375171 Gene

Variants for LOC105375171 Gene

Sequence variations from dbSNP and Humsavar for LOC105375171 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000153437 -- 17,367,620(-) C/G intron_variant
rs1000187936 -- 17,362,658(-) C/T non_coding_transcript_variant
rs1000774096 -- 17,371,850(-) C/T non_coding_transcript_variant
rs1000802319 -- 17,365,747(-) C/T intron_variant
rs1000809851 -- 17,371,599(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375171 Gene

Disorders for LOC105375171 Gene

No disorders were found for LOC105375171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375171 Gene

Publications for LOC105375171 Gene

No publications were found for LOC105375171 Gene.

Products for LOC105375171 Gene

Sources for LOC105375171 Gene

Content
Loading form....