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LOC105375084 Gene(RNA Gene)

Uncharacterized LOC105375084

GCID:
GC06P050797
GIFtS:
4
Genes Participants
UDN Logo

Aliases for LOC105375084 Gene

Subcategory (RNA class) for LOC105375084 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375084 Gene

  • Uncharacterized LOC105375084 3

External Ids for LOC105375084 Gene

Previous GeneCards Identifiers for LOC105375084 Gene

  • GC06U903244

Summaries for LOC105375084 Gene

GeneCards Summary for LOC105375084 Gene

LOC105375084 (Uncharacterized LOC105375084) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375084 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375084 Gene

Genomics for LOC105375084 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC105375084 Gene

Promoters and enhancers for LOC105375084 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J050815 Enhancer 1 Ensembl ENCODE 0.4 +18.1 18068 0.8 ATF1 RB1 ARNT BATF RAD21 CHAMP1 ZNF766 ARID2 EGR1 ZNF143 TFAP2B LOC105375084
GH06J050785 Enhancer 0.3 ENCODE 0.4 -11.7 -11730 1.3 FOXA2 LOC105375084 GC06P050720
GH06J050732 Enhancer 0.4 FANTOM5 0.2 -65.3 -65342 0.4 ATF7 ATF2 GC06P050720 TFAP2D LOC105375084
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375084 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375084 Gene

Genomic Locations for LOC105375084 Gene
chr6:50,797,933-50,802,822
(GRCh38/hg38)
Size:
4,890 bases
Orientation:
Plus strand

Genomic View for LOC105375084 Gene

Genes around LOC105375084 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375084 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375084 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105375084 Gene

Proteins for LOC105375084 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105375084 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375084 Gene

Domains & Families for LOC105375084 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375084 Gene

Function for LOC105375084 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375084 Gene

Localization for LOC105375084 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375084 Gene

Pathways & Interactions for LOC105375084 Gene

SuperPathways for LOC105375084 Gene

PathCards logo More details on SuperPathways for LOC105375084
No Data Available

Interacting Proteins for LOC105375084 Gene

Gene Ontology (GO) - Biological Process for LOC105375084 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375084 Gene

Drugs & Compounds for LOC105375084 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105375084 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375084 Gene

No ASD Table

Relevant External Links for LOC105375084 Gene

GeneLoc Exon Structure for
LOC105375084

No data available for mRNA/cDNA for LOC105375084 Gene

Expression for LOC105375084 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375084 Gene

Orthologs for LOC105375084 Gene

No data available for Orthologs and Evolution for LOC105375084 Gene

Paralogs for LOC105375084 Gene

No data available for Paralogs for LOC105375084 Gene

Variants for LOC105375084 Gene

Sequence variations from dbSNP and Humsavar for LOC105375084 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000012412 -- 50,802,364(+) T/C intron_variant
rs1000087264 -- 50,802,644(+) G/C intron_variant
rs1000376182 -- 50,796,250(+) G/C upstream_transcript_variant
rs1001014385 -- 50,801,005(+) G/A intron_variant
rs1001087471 -- 50,801,274(+) T/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375084 Gene

Disorders for LOC105375084 Gene

No disorders were found for LOC105375084 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375084 Gene

Publications for LOC105375084 Gene

No publications were found for LOC105375084 Gene.

Products for LOC105375084 Gene

Sources for LOC105375084 Gene

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