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Aliases for LOC105375080 Gene

Subcategory (RNA class) for LOC105375080 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105375080 Gene

  • Uncharacterized LOC105375080 3

External Ids for LOC105375080 Gene

Previous GeneCards Identifiers for LOC105375080 Gene

  • GC06U903096

Summaries for LOC105375080 Gene

GeneCards Summary for LOC105375080 Gene

LOC105375080 (Uncharacterized LOC105375080) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375080 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375080 Gene

Genomics for LOC105375080 Gene

GeneHancer (GH) Regulatory Elements for LOC105375080 Gene

Promoters and enhancers for LOC105375080 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I046932 Enhancer 0.7 Ensembl ENCODE dbSUPER 550.8 +1.5 1462 2 ATF2 LOC105375080 ADGRF5 LOC101926962 SLC25A27 TDRD6
GH06I046935 Enhancer 1 Ensembl ENCODE dbSUPER 0.8 +4.3 4296 1.8 SP1 FOXA2 JUN HLF MAX CEBPB MYC NR2F2 LOC101926962 LOC105375080 ADGRF5
GH06I046946 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.6 16560 4 POLR2A JUN ZSCAN4 MAX NR2F2 MEP1A PLA2G7 ADGRF5 LOC105375080
GH06I046921 Promoter/Enhancer 1 EPDnew Ensembl dbSUPER 0.4 -10.0 -9964 0.2 POLR2A ADGRF5 SLC25A27 LOC105375080 LOC101926962
GH06I046925 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -5.3 -5336 2.6 TEAD1 CEBPB CEBPG NR2F2 TEAD3 SP1 JUND CEBPA CREB1 FOSL2 LOC101926962 ADGRF5 LOC105375080
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375080 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375080 Gene

Genomic Locations for LOC105375080 Gene
chr6:46,931,865-46,937,165
(GRCh38/hg38)
Size:
5,301 bases
Orientation:
Plus strand

Genomic View for LOC105375080 Gene

Genes around LOC105375080 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375080 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375080 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375080 Gene

Proteins for LOC105375080 Gene

Post-translational modifications for LOC105375080 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375080 Gene

Domains & Families for LOC105375080 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375080 Gene

Function for LOC105375080 Gene

Phenotypes From GWAS Catalog for LOC105375080 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375080 Gene

Localization for LOC105375080 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375080 Gene

Pathways & Interactions for LOC105375080 Gene

SuperPathways for LOC105375080 Gene

No Data Available

Interacting Proteins for LOC105375080 Gene

Gene Ontology (GO) - Biological Process for LOC105375080 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375080 Gene

Drugs & Compounds for LOC105375080 Gene

No Compound Related Data Available

Transcripts for LOC105375080 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375080 Gene

No ASD Table

Relevant External Links for LOC105375080 Gene

GeneLoc Exon Structure for
LOC105375080

No data available for mRNA/cDNA for LOC105375080 Gene

Expression for LOC105375080 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375080 Gene

Orthologs for LOC105375080 Gene

No data available for Orthologs and Evolution for LOC105375080 Gene

Paralogs for LOC105375080 Gene

No data available for Paralogs for LOC105375080 Gene

Variants for LOC105375080 Gene

Sequence variations from dbSNP and Humsavar for LOC105375080 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000127317 -- 46,935,118(+) C/T intron_variant
rs1000205293 -- 46,926,096(+) A/T genic_upstream_transcript_variant, intron_variant
rs1000378491 -- 46,921,091(+) A/T upstream_transcript_variant
rs1000385735 -- 46,922,951(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000473343 -- 46,920,895(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375080 Gene

Disorders for LOC105375080 Gene

No disorders were found for LOC105375080 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375080 Gene

Publications for LOC105375080 Gene

No publications were found for LOC105375080 Gene.

Products for LOC105375080 Gene

Sources for LOC105375080 Gene

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