Aliases for LOC105375075 Gene

Subcategory (RNA class) for LOC105375075 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LOC105375075 Gene

  • Uncharacterized LOC105375075 3
  • HSALNG0050295 169
  • NONHSAG043854 94
  • Lnc-AARS2-2 170

External Ids for LOC105375075 Gene

Previous GeneCards Identifiers for LOC105375075 Gene

  • GC06U902905

Summaries for LOC105375075 Gene

GeneCards Summary for LOC105375075 Gene

LOC105375075 (Uncharacterized LOC105375075) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105375075 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105375075 Gene

Genomics for LOC105375075 Gene

GeneHancer (GH) Regulatory Elements for LOC105375075 Gene

Promoters and enhancers for LOC105375075 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J044569 Enhancer 0.4 Ensembl ENCODE 750.6 +0.5 454 1.4 ZIC2 LOC105375075 lnc-CDC5L-4 ENSG00000279076 RF00017-5580
GH06J044557 Enhancer 0.9 Ensembl CraniofacialAtlas 0.4 +11.6 11576 2.4 SP7 GLIS2 PKNOX1 ZIC2 ZBTB8A TCF7L2 ZSCAN4 OSR2 RAD21 ZBTB17 ENSG00000279076 lnc-CDC5L-4 LOC105375075 RF00017-5580
GH06J044567 Enhancer 0.5 Ensembl 0.6 +2.7 2654 1.4 MAFK ZNF316 MAFG MAFF EMSY LOC105375075 lnc-CDC5L-4 ENSG00000279076 RF00017-5580
GH06J044561 Enhancer 0.7 CraniofacialAtlas 0.4 +9.2 9191 1.4 CTBP1 ZNF362 SP7 GLIS2 PKNOX1 ZIC2 ZBTB8A ZSCAN4 ZEB2 ZNF629 ENSG00000279076 LOC105375075 lnc-CDC5L-4 RF00017-5580
GH06J044563 Enhancer 0.5 Ensembl 0.4 +7.0 6954 0.4 FOXA2 CREB1 ZFHX2 BATF ZMYM3 KDM1A ZKSCAN1 LOC105375075 lnc-CDC5L-4 ENSG00000279076 RF00017-5580
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105375075 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375075 Gene

Genomic Locations for LOC105375075 Gene
chr6:44,478,800-44,570,555
(GRCh38/hg38)
Size:
91,756 bases
Orientation:
Minus strand

Genomic View for LOC105375075 Gene

Genes around LOC105375075 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375075 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375075 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375075 Gene

Proteins for LOC105375075 Gene

Post-translational modifications for LOC105375075 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375075 Gene

Domains & Families for LOC105375075 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105375075 Gene

Function for LOC105375075 Gene

Phenotypes From GWAS Catalog for LOC105375075 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375075 Gene

Localization for LOC105375075 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375075 Gene

Pathways & Interactions for LOC105375075 Gene

PathCards logo

SuperPathways for LOC105375075 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105375075 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375075 Gene

Drugs & Compounds for LOC105375075 Gene

No Compound Related Data Available

Transcripts for LOC105375075 Gene

mRNA/cDNA for LOC105375075 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375075 Gene

No ASD Table

Relevant External Links for LOC105375075 Gene

GeneLoc Exon Structure for
LOC105375075

Expression for LOC105375075 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375075 Gene

Orthologs for LOC105375075 Gene

No data available for Orthologs and Evolution for LOC105375075 Gene

Paralogs for LOC105375075 Gene

No data available for Paralogs for LOC105375075 Gene

Variants for LOC105375075 Gene

Sequence variations from dbSNP and Humsavar for LOC105375075 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000214463 -- 44,547,518(-) C/T intron_variant
rs1000400250 -- 44,553,274(-) C/G/T upstream_transcript_variant
rs1000427588 -- 44,552,185(-) A/T upstream_transcript_variant
rs1000454447 -- 44,547,015(-) C/T intron_variant
rs1000530785 -- 44,551,379(-) C/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375075 Gene

Disorders for LOC105375075 Gene

No disorders were found for LOC105375075 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375075 Gene

Publications for LOC105375075 Gene

No publications were found for LOC105375075 Gene.

No data available for External Links for LOC105375075 Gene

Products for LOC105375075 Gene

Sources for LOC105375075 Gene