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Aliases for LOC105375050 Gene

Subcategory (RNA class) for LOC105375050 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105375050 Gene

  • Uncharacterized LOC105375050 3
  • AL139275.2 5

External Ids for LOC105375050 Gene

Previous GeneCards Identifiers for LOC105375050 Gene

  • GC06U902725

Summaries for LOC105375050 Gene

GeneCards Summary for LOC105375050 Gene

LOC105375050 (Uncharacterized LOC105375050) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105375050 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105375050 Gene

Genomics for LOC105375050 Gene

GeneHancer (GH) Regulatory Elements for LOC105375050 Gene

Promoters and enhancers for LOC105375050 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J040308 Enhancer 0.7 ENCODE 0.3 -32.5 -32547 0.2 CTCF IRF2 NFIB RB1 TAL1 SIN3A ZNF384 RAD21 CC2D1A CTBP1 TDRG1 LOC105375050
GH06J040330 Enhancer 0.7 ENCODE 0.2 -53.0 -52952 1 CTCF NFIB SIN3A RAD21 ZFHX2 GATA3 CTBP1 LCORL POLR2A ZNF143 LRFN2 TDRG1 LOC105375050
GH06J040285 Enhancer 0.3 ENCODE 0.4 -9.8 -9772 1.4 REST LOC105375050 TDRG1
GH06J040288 Enhancer 0.3 ENCODE 0.4 -12.9 -12855 0.9 MNT LOC105375050 TDRG1
GH06J040328 Enhancer 0.6 ENCODE 0.2 -52.3 -52287 0.1 CTCF TRIM22 SIN3A ZEB2 RAD21 ZNF217 ZFHX2 GATA3 XRCC5 CTBP1 TDRG1 LOC105375050
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105375050 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105375050 Gene

Genomic Locations for LOC105375050 Gene
chr6:40,271,566-40,276,310
(GRCh38/hg38)
Size:
4,745 bases
Orientation:
Minus strand
chr6:40,239,305-40,243,976
(GRCh37/hg19)
Size:
4,672 bases
Orientation:
Minus strand

Genomic View for LOC105375050 Gene

Genes around LOC105375050 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105375050 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105375050 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105375050 Gene

Proteins for LOC105375050 Gene

Post-translational modifications for LOC105375050 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105375050 Gene

Domains & Families for LOC105375050 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105375050 Gene

Function for LOC105375050 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105375050 Gene

Localization for LOC105375050 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105375050 Gene

Pathways & Interactions for LOC105375050 Gene

SuperPathways for LOC105375050 Gene

No Data Available

Interacting Proteins for LOC105375050 Gene

Gene Ontology (GO) - Biological Process for LOC105375050 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105375050 Gene

Drugs & Compounds for LOC105375050 Gene

No Compound Related Data Available

Transcripts for LOC105375050 Gene

mRNA/cDNA for LOC105375050 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105375050 Gene

No ASD Table

Relevant External Links for LOC105375050 Gene

GeneLoc Exon Structure for
LOC105375050

Expression for LOC105375050 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105375050 Gene

Orthologs for LOC105375050 Gene

Evolution for LOC105375050 Gene

ENSEMBL:
Gene Tree for LOC105375050 (if available)
TreeFam:
Gene Tree for LOC105375050 (if available)

No data available for Orthologs for LOC105375050 Gene

Paralogs for LOC105375050 Gene

No data available for Paralogs for LOC105375050 Gene

Variants for LOC105375050 Gene

Sequence variations from dbSNP and Humsavar for LOC105375050 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000023552 -- 40,277,785(-) T/C upstream_transcript_variant
rs1000024567 -- 40,278,167(-) G/A upstream_transcript_variant
rs1000229589 -- 40,278,133(-) C/T upstream_transcript_variant
rs1001167533 -- 40,278,304(-) T/G upstream_transcript_variant
rs1001353266 -- 40,273,033(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105375050 Gene

Disorders for LOC105375050 Gene

No disorders were found for LOC105375050 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105375050 Gene

Publications for LOC105375050 Gene

No publications were found for LOC105375050 Gene.

Products for LOC105375050 Gene

Sources for LOC105375050 Gene

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