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LOC105374998 Gene(RNA Gene)

Uncharacterized LOC105374998

GCID:
GC06P028399
GIFtS:
4
Genes Participants
UDN Logo

Aliases for LOC105374998 Gene

Subcategory (RNA class) for LOC105374998 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374998 Gene

  • Uncharacterized LOC105374998 3

External Ids for LOC105374998 Gene

Previous GeneCards Identifiers for LOC105374998 Gene

  • GC06U902796

Summaries for LOC105374998 Gene

GeneCards Summary for LOC105374998 Gene

LOC105374998 (Uncharacterized LOC105374998) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374998 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374998 Gene

Genomics for LOC105374998 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC105374998 Gene

Promoters and enhancers for LOC105374998 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028398 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.5 -476 2.5 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D ZSCAN12 LOC105374998 ZKSCAN3 ZKSCAN4 ZNF603P ZKSCAN8 ZSCAN9 ZSCAN23 ZSCAN31 TRIM27
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374998 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374998 Gene

Genomic Locations for LOC105374998 Gene
chr6:28,399,819-28,403,595
(GRCh38/hg38)
Size:
3,777 bases
Orientation:
Plus strand

Genomic View for LOC105374998 Gene

Genes around LOC105374998 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374998 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374998 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105374998 Gene

Proteins for LOC105374998 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105374998 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374998 Gene

Domains & Families for LOC105374998 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374998 Gene

Function for LOC105374998 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374998 Gene

Localization for LOC105374998 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374998 Gene

Pathways & Interactions for LOC105374998 Gene

SuperPathways for LOC105374998 Gene

PathCards logo More details on SuperPathways for LOC105374998
No Data Available

Interacting Proteins for LOC105374998 Gene

Gene Ontology (GO) - Biological Process for LOC105374998 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374998 Gene

Drugs & Compounds for LOC105374998 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105374998 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374998 Gene

No ASD Table

Relevant External Links for LOC105374998 Gene

GeneLoc Exon Structure for
LOC105374998

No data available for mRNA/cDNA for LOC105374998 Gene

Expression for LOC105374998 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374998 Gene

Orthologs for LOC105374998 Gene

No data available for Orthologs and Evolution for LOC105374998 Gene

Paralogs for LOC105374998 Gene

No data available for Paralogs for LOC105374998 Gene

Variants for LOC105374998 Gene

Sequence variations from dbSNP and Humsavar for LOC105374998 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000222096 -- 28,403,598(+) T/C downstream_transcript_variant
rs1000607880 -- 28,399,736(+) C/G upstream_transcript_variant
rs1001104261 -- 28,398,616(+) C/T upstream_transcript_variant
rs1001488992 -- 28,397,935(+) G/T upstream_transcript_variant
rs1001663984 -- 28,399,499(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374998 Gene

Disorders for LOC105374998 Gene

No disorders were found for LOC105374998 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374998 Gene

Publications for LOC105374998 Gene

No publications were found for LOC105374998 Gene.

Products for LOC105374998 Gene

Sources for LOC105374998 Gene

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