LOC105374997 Gene (RNA Gene)

Uncharacterized LOC105374997

GC06M028422
GIFtS:
2

Aliases for LOC105374997 Gene

Subcategory (RNA class) for LOC105374997 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374997 Gene

  • Uncharacterized LOC105374997 3

External Ids for LOC105374997 Gene

Previous GeneCards Identifiers for LOC105374997 Gene

  • GC06U902953

Summaries for LOC105374997 Gene

GeneCards Summary for LOC105374997 Gene

LOC105374997 (Uncharacterized LOC105374997) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374997 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105374997 Gene

Genomics for LOC105374997 Gene

GeneHancer (GH) Regulatory Elements for LOC105374997 Gene

Promoters and enhancers for LOC105374997 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J028425 Enhancer 0.6 Ensembl 750.6 -1.1 -1082 0.6 SMARCE1 IKZF2 HDAC1 PKNOX1 LEF1 ZNF316 SOX6 ZNF766 RUNX3 MAFG LOC105374997 RF00017-5388 RF00994-897 lnc-ZSCAN23-1 COX11P1 OR2E1P ZSCAN12 GPX5 ZSCAN23
GH06J028424 Enhancer 0.4 Ensembl 750.6 +0.1 118 0.2 SMARCE1 BACH1 FOSL2 FOSL1 LOC105374997 RF00994-897 lnc-ZSCAN23-1 COX11P1 OR2E1P ZSCAN12 GPX5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374997 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374997 Gene

Genomic Locations for LOC105374997 Gene
chr6:28,421,575-28,424,819
(GRCh38/hg38)
Size:
3,245 bases
Orientation:
Minus strand

Genomic View for LOC105374997 Gene

Genes around LOC105374997 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374997 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374997 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105374997 Gene

Proteins for LOC105374997 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105374997 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374997 Gene

Domains & Families for LOC105374997 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105374997 Gene

Function for LOC105374997 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374997 Gene

Localization for LOC105374997 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374997 Gene

Pathways & Interactions for LOC105374997 Gene

PathCards logo

SuperPathways for LOC105374997 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105374997 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374997 Gene

Drugs & Compounds for LOC105374997 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105374997 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374997 Gene

No ASD Table

Relevant External Links for LOC105374997 Gene

GeneLoc Exon Structure for
LOC105374997

No data available for mRNA/cDNA for LOC105374997 Gene

Expression for LOC105374997 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374997 Gene

Orthologs for LOC105374997 Gene

No data available for Orthologs and Evolution for LOC105374997 Gene

Paralogs for LOC105374997 Gene

No data available for Paralogs for LOC105374997 Gene

Variants for LOC105374997 Gene

Sequence variations from dbSNP and Humsavar for LOC105374997 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000064282 -- 28,420,107(-) C/T non_coding_transcript_variant
rs1001063961 -- 28,422,069(-) TATATATATATA/TATATATATATATA non_coding_transcript_variant
rs1001090526 -- 28,420,970(-) T/C non_coding_transcript_variant
rs1001463352 -- 28,422,586(-) A/C non_coding_transcript_variant
rs1001809900 -- 28,422,949(-) T/C non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374997 Gene

Disorders for LOC105374997 Gene

No disorders were found for LOC105374997 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374997 Gene

Publications for LOC105374997 Gene

No publications were found for LOC105374997 Gene.

No data available for External Links for LOC105374997 Gene

Products for LOC105374997 Gene

Sources for LOC105374997 Gene