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Aliases for LOC105374996 Gene

Subcategory (RNA class) for LOC105374996 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374996 Gene

  • Uncharacterized LOC105374996 3

External Ids for LOC105374996 Gene

Previous GeneCards Identifiers for LOC105374996 Gene

  • GC06U903019

Summaries for LOC105374996 Gene

GeneCards Summary for LOC105374996 Gene

LOC105374996 (Uncharacterized LOC105374996) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374996 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374996 Gene

Genomics for LOC105374996 Gene

GeneHancer (GH) Regulatory Elements for LOC105374996 Gene

Promoters and enhancers for LOC105374996 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028643 Enhancer 0.9 ENCODE 0.7 +4.8 4795 0.5 ARNT ARID4B SIN3A FEZF1 ZNF2 BRCA1 YY1 NCOA2 GTF3C2 ZNF213 TRA-TGC2-1 GC06P028644 ZSCAN12 ZKSCAN8 ZKSCAN3 ZKSCAN4 ZSCAN9 ZNF311 ZSCAN23 GPX5
GH06J028634 Enhancer 0.9 Ensembl ENCODE 0.7 -3.8 -3842 0.5 MXI1 SAP130 ZNF48 ZNF335 POLR2A ZNF366 ZBTB48 PRDM10 ZNF189 HLF TRA-TGC9-1 ENSG00000271440 ZNF603P GPX6 OR2E1P COX11P1 ZSCAN23 LOC105374996 GC06P028492
GH06J028647 Promoter/Enhancer 1.5 Ensembl ENCODE 0.4 +9.9 9888 1.9 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF213 E2F8 LINC00533 TRT-CGT3-1 GC06M028665 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN23 ZKSCAN4 GPX5 SUMO2P1
GH06J028636 Enhancer 0.7 FANTOM5 0.7 -4.5 -4470 0.3 ZNF189 HLF ZNF2 ZNF843 BCL11B ZGPAT ATF3 ZNF366 KLF16 ZSCAN5C TRA-TGC9-1 ENSG00000271440 GPX6 OR2E1P COX11P1 ZSCAN23 LOC105374996 GC06P028492
GH06J028635 Enhancer 0.7 FANTOM5 0.7 -3.3 -3334 0.2 MXI1 PKNOX1 ZNF2 ZNF335 ZNF366 ZBTB48 POLR2A PRDM10 ZNF600 KLF8 TRA-TGC9-1 ENSG00000271440 ZSCAN23 GPX6 OR2E1P COX11P1 ZSCAN26 ZBED9 NKAPL LOC105374996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374996 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374996 Gene

Genomic Locations for LOC105374996 Gene
chr6:28,638,794-28,653,234
(GRCh38/hg38)
Size:
14,441 bases
Orientation:
Plus strand

Genomic View for LOC105374996 Gene

Genes around LOC105374996 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374996 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374996 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374996 Gene

Proteins for LOC105374996 Gene

Post-translational modifications for LOC105374996 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374996 Gene

Domains & Families for LOC105374996 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374996 Gene

Function for LOC105374996 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374996 Gene

Localization for LOC105374996 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374996 Gene

Pathways & Interactions for LOC105374996 Gene

SuperPathways for LOC105374996 Gene

No Data Available

Interacting Proteins for LOC105374996 Gene

Gene Ontology (GO) - Biological Process for LOC105374996 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374996 Gene

Drugs & Compounds for LOC105374996 Gene

No Compound Related Data Available

Transcripts for LOC105374996 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374996 Gene

No ASD Table

Relevant External Links for LOC105374996 Gene

GeneLoc Exon Structure for
LOC105374996

No data available for mRNA/cDNA for LOC105374996 Gene

Expression for LOC105374996 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374996 Gene

Orthologs for LOC105374996 Gene

No data available for Orthologs and Evolution for LOC105374996 Gene

Paralogs for LOC105374996 Gene

No data available for Paralogs for LOC105374996 Gene

Variants for LOC105374996 Gene

Sequence variations from dbSNP and Humsavar for LOC105374996 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000028310 -- 28,641,319(+) C/T intron_variant
rs1000217018 -- 28,637,257(+) G/A upstream_transcript_variant
rs1000254730 -- 28,638,666(+) C/A non_coding_transcript_variant
rs1000289159 -- 28,647,966(+) T/C intron_variant, non_coding_transcript_variant
rs1000512353 -- 28,644,330(+) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374996 Gene

Disorders for LOC105374996 Gene

No disorders were found for LOC105374996 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374996 Gene

Publications for LOC105374996 Gene

No publications were found for LOC105374996 Gene.

Products for LOC105374996 Gene

Sources for LOC105374996 Gene

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