LOC105374988 Gene (RNA Gene)

Uncharacterized LOC105374988

GC06P028759
GIFtS:
7
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Aliases for LOC105374988 Gene

Subcategory (RNA class) for LOC105374988 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC105374988 Gene

  • Uncharacterized LOC105374988 3
  • Novel Transcript 5
  • NONHSAG043251.2 91
  • HSALNG0048786 164
  • AL121936.1 5
  • Lnc-ABT1-2 165

External Ids for LOC105374988 Gene

Previous GeneCards Identifiers for LOC105374988 Gene

  • GC06U903051
  • GC06P026660
  • GC06P027361
  • GC06P027500
  • GC06P027590
  • GC06P028048
  • GC06P026700
  • GC06P026735
  • GC06P026765
  • GC06P026835
  • GC06P026935
  • GC06P027030
  • GC06P027112
  • GC06P027259

Summaries for LOC105374988 Gene

GeneCards Summary for LOC105374988 Gene

LOC105374988 (Uncharacterized LOC105374988) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105374988 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105374988 Gene

Genomics for LOC105374988 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC105374988 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J026567 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +1.3 1277 5.6 ZNF221 BRCA1 CEBPG CREB1 GATAD2A CTCF HNRNPL TEAD4 PRDM10 ZNF629 LOC105374988 TRY-GTA1-1 TRA-AGC11-1-001 piR-44715 BTN3A2 HMGN4 ENSG00000261584 ABT1 BTN2A1 ZNF391
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374988 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105374988 Gene

Genomic Locations for LOC105374988 Gene
chr6:26,569,324-26,574,698
(GRCh38/hg38)
Size:
5,375 bases
Orientation:
Plus strand

Genomic View for LOC105374988 Gene

Genes around LOC105374988 on UCSC Golden Path with GeneCards custom track
LOC105374988 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC105374988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374988 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105374988 Gene

Proteins for LOC105374988 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105374988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374988 Gene

Domains & Families for LOC105374988 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105374988 Gene

Function for LOC105374988 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105374988 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374988 Gene

Localization for LOC105374988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374988 Gene

Pathways & Interactions for LOC105374988 Gene

PathCards logo

SuperPathways for LOC105374988 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105374988 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105374988 Gene

Drugs & Compounds for LOC105374988 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105374988 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105374988 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BE08E0_9606 lncRNA 2884 3

Ensembl: ENST00000641660 (view in UCSC) ,

LncBook: HSALNT0102932,

LNCipedia: lnc-ABT1-2:2,

URS0000A76448_9606 lncRNA 2884 1

RefSeq: NR_134611,

URS00008C0A62_9606 lncRNA 2883 2

LNCipedia: lnc-ABT1-2:1,

NONCODE: NONHSAT108296.2,

URS00009B4D22_9606 lncRNA 2883 2

LncBook: HSALNT0102933,

NONCODE: NONHSAT206992.1,

LOC105374988 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105374988 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374988 Gene

No ASD Table

Relevant External Links for LOC105374988 Gene

GeneLoc Exon Structure for
LOC105374988

Expression for LOC105374988 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374988 Gene

Orthologs for LOC105374988 Gene

Evolution for LOC105374988 Gene

ENSEMBL:
Gene Tree for LOC105374988 (if available)
TreeFam:
Gene Tree for LOC105374988 (if available)

No data available for Orthologs for LOC105374988 Gene

Paralogs for LOC105374988 Gene

No data available for Paralogs for LOC105374988 Gene

Variants for LOC105374988 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LOC105374988 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374988 Gene

Disorders for LOC105374988 Gene

No disorders were found for LOC105374988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374988 Gene

Publications for LOC105374988 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC105374988 Gene

Products for LOC105374988 Gene

Sources for LOC105374988 Gene