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LOC105374988 Gene(RNA Gene)

Uncharacterized LOC105374988

GCID:
GC06P027112
GIFtS:
6
Genes Participants
UDN Logo

Aliases for LOC105374988 Gene

Subcategory (RNA class) for LOC105374988 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374988 Gene

  • Uncharacterized LOC105374988 3
  • AL121936.1 5

External Ids for LOC105374988 Gene

Previous GeneCards Identifiers for LOC105374988 Gene

  • GC06U903051
  • GC06P026660
  • GC06P026700
  • GC06P026735
  • GC06P026765
  • GC06P026835
  • GC06P026935
  • GC06P027030

Summaries for LOC105374988 Gene

GeneCards Summary for LOC105374988 Gene

LOC105374988 (Uncharacterized LOC105374988) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374988 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374988 Gene

Genomics for LOC105374988 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC105374988 Gene

Promoters and enhancers for LOC105374988 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J026567 Enhancer 1.5 Ensembl ENCODE dbSUPER 650.7 +1.4 1449 5.3 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 LOC105374988 TRY-GTA1-1 ABT1 BTN3A2 HMGN4 LOC102724851 BTN2A1 BTN2A3P ZNF322 HCG11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374988 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374988 Gene

Genomic Locations for LOC105374988 Gene
chr6:26,569,078-26,574,698
(GRCh38/hg38)
Size:
5,621 bases
Orientation:
Plus strand
chr6:26,730,736-26,730,809
(GRCh37/hg19)
Size:
74 bases
Orientation:
Plus strand

Genomic View for LOC105374988 Gene

Genes around LOC105374988 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374988 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC105374988 Gene

Proteins for LOC105374988 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC105374988 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374988 Gene

Domains & Families for LOC105374988 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374988 Gene

Function for LOC105374988 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC105374988 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374988 Gene

Localization for LOC105374988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374988 Gene

Pathways & Interactions for LOC105374988 Gene

SuperPathways for LOC105374988 Gene

PathCards logo More details on SuperPathways for LOC105374988
No Data Available

Interacting Proteins for LOC105374988 Gene

Gene Ontology (GO) - Biological Process for LOC105374988 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374988 Gene

Drugs & Compounds for LOC105374988 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC105374988 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC105374988 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374988 Gene

No ASD Table

Relevant External Links for LOC105374988 Gene

GeneLoc Exon Structure for
LOC105374988

Expression for LOC105374988 Gene

Products:

  1. Primer
  2. Gene Expression Assay

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374988 Gene

Orthologs for LOC105374988 Gene

Evolution for LOC105374988 Gene

ENSEMBL:
Gene Tree for LOC105374988 (if available)
TreeFam:
Gene Tree for LOC105374988 (if available)

No data available for Orthologs for LOC105374988 Gene

Paralogs for LOC105374988 Gene

No data available for Paralogs for LOC105374988 Gene

Variants for LOC105374988 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LOC105374988 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000012353 -- 26,568,853(+) T/C upstream_transcript_variant
rs1000214245 -- 26,572,728(+) /C non_coding_transcript_variant
rs1000264557 -- 26,574,692(+) T/C non_coding_transcript_variant
rs1001016068 -- 26,570,000(+) G/A intron_variant
rs1001065307 -- 26,570,272(+) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374988 Gene

Disorders for LOC105374988 Gene

Additional Disease Information for LOC105374988

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC105374988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105374988 Gene

Publications for LOC105374988 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC105374988 Gene

Sources for LOC105374988 Gene

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