Aliases for LOC105374972 Gene

Data sources for LOC105374972 Gene:

RNA type for LOC105374972 Gene

lncRNA

Aliases for LOC105374972 Gene

External Ids for LOC105374972 Gene

Previous GeneCards Identifiers for LOC105374972 Gene

  • GC06U902827

Summaries for LOC105374972 Gene

GeneCards Summary for LOC105374972 Gene

LOC105374972 (Uncharacterized LOC105374972) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC105374972 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC105374972 Gene

Genomics for LOC105374972 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC105374972 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J022717 Enhancer 0.2 Ensembl 250.7 -0.1 -77 0.8 LOC105374972 HSALNG0048566 HSALNG0048565 HSALNG0048567 HDGFL1
GH06J022699 Enhancer 0.6 Ensembl CraniofacialAtlas 0.4 +18.8 18838 1.4 MAFF MAFK NR2F2 HSALNG0048563 lnc-PRL-10 LOC105374972 HDGFL1
GH06J022655 Enhancer 0.8 Ensembl ENCODE 0.2 +60.3 60323 3.6 TRIM22 NR2F1 ZNF217 PKNOX1 ARID3A IKZF1 TARDBP TBL1XR1 MTA2 IKZF2 ENSG00000286954 HDGFL1 HSALNG0048560 LOC105374973 LOC105374972
GH06J022727 Enhancer 0.3 Ensembl CraniofacialAtlas 0.4 -9.9 -9862 0.4 HSALNG0048567 LOC105374972 HSALNG0048566 HSALNG0048565 HDGFL1
GH06J022654 Enhancer 0.4 Ensembl ENCODE 0.2 +63.6 63641 1 ZNF24 HSALNG0048560 LOC105374973 HDGFL1 LOC105374972 CASC15
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374972 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC105374972 Gene

Latest Assembly
chr6:22,643,509-22,717,924
(GRCh38/hg38)
Size:
74,416 bases
Orientation:
Minus strand

Previous Assembly
chr6:22,643,739-22,718,153
(GRCh37/hg19 by Entrez Gene)
Size:
74,415 bases
Orientation:
Minus strand

Genomic View for LOC105374972 Gene

Genes around LOC105374972 on UCSC Golden Path with GeneCards custom track
LOC105374972 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC105374972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374972 Gene

Proteins for LOC105374972 Gene

Post-translational modifications for LOC105374972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374972 Gene

Domains & Families for LOC105374972 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC105374972 Gene

Function for LOC105374972 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374972 Gene

Localization for LOC105374972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374972 Gene

Pathways & Interactions for LOC105374972 Gene

PathCards logo

SuperPathways for LOC105374972 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC105374972 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC105374972 Gene

Drugs & Compounds for LOC105374972 Gene

No Compound Related Data Available

Transcripts for LOC105374972 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC105374972 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7751A_9606 lncRNA 761 2

RefSeq: NR_134614,

LNCipedia: lnc-PRL-3:5,

URS0000A7779A_9606 lncRNA 749 1

RefSeq: NR_134613,

URS00008C0637_9606 lncRNA 4245 2

LNCipedia: lnc-PRL-3:2,

NONCODE: NONHSAT108080.2,

URS00009B516D_9606 lncRNA 781 2

LncBook: HSALNT0102502,

NONCODE: NONHSAT208870.1,

URS0000D5957E_9606 lncRNA 751 1

LNCipedia: lnc-PRL-3:6,

LOC105374972 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC105374972 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374972 Gene

No ASD Table

Relevant External Links for LOC105374972 Gene

GeneLoc Exon Structure for
LOC105374972

Expression for LOC105374972 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374972 Gene

Orthologs for LOC105374972 Gene

No data available for Orthologs and Evolution for LOC105374972 Gene

Paralogs for LOC105374972 Gene

No data available for Paralogs for LOC105374972 Gene

Variants for LOC105374972 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC105374972 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374972 Gene

Disorders for LOC105374972 Gene

No disorders were found for LOC105374972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374972 Gene

Publications for LOC105374972 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LOC105374972 Gene

Products for LOC105374972 Gene

Sources for LOC105374972 Gene