Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC105374972 Gene

Subcategory (RNA class) for LOC105374972 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374972 Gene

  • Uncharacterized LOC105374972 3

External Ids for LOC105374972 Gene

Previous GeneCards Identifiers for LOC105374972 Gene

  • GC06U902827

Summaries for LOC105374972 Gene

GeneCards Summary for LOC105374972 Gene

LOC105374972 (Uncharacterized LOC105374972) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374972 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374972 Gene

Genomics for LOC105374972 Gene

GeneHancer (GH) Regulatory Elements for LOC105374972 Gene

Promoters and enhancers for LOC105374972 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I022737 Enhancer 0.5 ENCODE 0.4 -19.6 -19635 0.2 CTCF ZNF654 ELF1 RAD21 LOC105374972 GC06P022834
GH06I022699 Enhancer 0.4 Ensembl 0.4 +18.6 18621 0.2 MAFK NR2F2 LOC105374972 LOC102724736
GH06I022655 Enhancer 0.6 ENCODE 0.2 +60.3 60304 3.3 PKNOX1 NR2F1 TRIM22 DPF2 ZNF217 POLR2A IKZF1 TARDBP ATF7 RUNX3 HDGFL1 LOC102724736 LOC105374973 LOC105374972
GH06I022826 Enhancer 1.1 Ensembl ENCODE 0.1 -110.2 -110160 3.7 PKNOX1 RAD21 RFX5 ZEB1 ZNF335 ZNF366 ZNF143 RCOR1 FOS ZNF654 GC06P022834 LOC105374972 LOC105374974
GH06I022709 Enhancer 0.2 ENCODE 0.4 +8.1 8087 0.5 LOC105374972 LOC102724736
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374972 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374972 Gene

Genomic Locations for LOC105374972 Gene
chr6:22,654,160-22,717,922
(GRCh38/hg38)
Size:
63,763 bases
Orientation:
Minus strand

Genomic View for LOC105374972 Gene

Genes around LOC105374972 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374972 Gene

Proteins for LOC105374972 Gene

Post-translational modifications for LOC105374972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374972 Gene

Domains & Families for LOC105374972 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374972 Gene

Function for LOC105374972 Gene

Phenotypes From GWAS Catalog for LOC105374972 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374972 Gene

Localization for LOC105374972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374972 Gene

Pathways & Interactions for LOC105374972 Gene

SuperPathways for LOC105374972 Gene

No Data Available

Interacting Proteins for LOC105374972 Gene

Gene Ontology (GO) - Biological Process for LOC105374972 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374972 Gene

Drugs & Compounds for LOC105374972 Gene

No Compound Related Data Available

Transcripts for LOC105374972 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374972 Gene

No ASD Table

Relevant External Links for LOC105374972 Gene

GeneLoc Exon Structure for
LOC105374972

No data available for mRNA/cDNA for LOC105374972 Gene

Expression for LOC105374972 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374972 Gene

Orthologs for LOC105374972 Gene

No data available for Orthologs and Evolution for LOC105374972 Gene

Paralogs for LOC105374972 Gene

No data available for Paralogs for LOC105374972 Gene

Variants for LOC105374972 Gene

Sequence variations from dbSNP and Humsavar for LOC105374972 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000018496 -- 22,695,253(-) T/G intron_variant
rs1000092514 -- 22,680,731(-) C/G intron_variant
rs1000099691 -- 22,654,968(-) T/C intron_variant
rs1000156956 -- 22,679,050(-) A/T intron_variant
rs1000160967 -- 22,697,827(-) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374972 Gene

Disorders for LOC105374972 Gene

Additional Disease Information for LOC105374972

No disorders were found for LOC105374972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105374972 Gene

Publications for LOC105374972 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC105374972 Gene

Sources for LOC105374972 Gene

Content
Loading form....