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Aliases for LOC105374965 Gene

Subcategory (RNA class) for LOC105374965 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374965 Gene

  • Uncharacterized LOC105374965 3

External Ids for LOC105374965 Gene

Previous GeneCards Identifiers for LOC105374965 Gene

  • GC06U902938

Summaries for LOC105374965 Gene

GeneCards Summary for LOC105374965 Gene

LOC105374965 (Uncharacterized LOC105374965) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374965 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374965 Gene

Genomics for LOC105374965 Gene

GeneHancer (GH) Regulatory Elements for LOC105374965 Gene

Promoters and enhancers for LOC105374965 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I020069 Enhancer 0.9 ENCODE 0.4 +5.3 5279 0.2 PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 NCOA1 MEF2D LOC105374965 RPL29P17
GH06I020092 Enhancer 0.9 Ensembl ENCODE 0.4 -17.9 -17867 0.4 CTCF PKNOX1 FOXA2 ARNT ZNF2 RAD21 POLR2A ZNF143 SMC3 MIXL1 LOC105374965 LOC101928573
GH06I020093 Enhancer 0.7 ENCODE 0.4 -17.5 -17541 0.2 SMARCA5 CTCF PKNOX1 ZNF654 FOXA2 ARNT TRIM22 REST ZEB2 ZNF2 LOC105374965 LOC101928573
GH06I020200 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.1 -132.6 -132566 13.5 HDGF PKNOX1 ARNT SIN3A ZNF2 IRF4 YY1 ZNF766 CBX5 ZNF143 MBOAT1 CDKAL1 LOC101928573 LOC105374965
GH06I020173 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -99.2 -99228 1.8 SMARCE1 AFF1 SOX6 ETV1 TEAD4 BHLHE40 CEBPB USF2 CEBPG MNT MBOAT1 LOC101928573 LOC105374965
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374965 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374965 Gene

Genomic Locations for LOC105374965 Gene
chr6:20,069,576-20,074,664
(GRCh38/hg38)
Size:
5,089 bases
Orientation:
Minus strand

Genomic View for LOC105374965 Gene

Genes around LOC105374965 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374965 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374965 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374965 Gene

Proteins for LOC105374965 Gene

Post-translational modifications for LOC105374965 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374965 Gene

Domains & Families for LOC105374965 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374965 Gene

Function for LOC105374965 Gene

Phenotypes From GWAS Catalog for LOC105374965 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374965 Gene

Localization for LOC105374965 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374965 Gene

Pathways & Interactions for LOC105374965 Gene

SuperPathways for LOC105374965 Gene

No Data Available

Interacting Proteins for LOC105374965 Gene

Gene Ontology (GO) - Biological Process for LOC105374965 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374965 Gene

Drugs & Compounds for LOC105374965 Gene

No Compound Related Data Available

Transcripts for LOC105374965 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374965 Gene

No ASD Table

Relevant External Links for LOC105374965 Gene

GeneLoc Exon Structure for
LOC105374965

No data available for mRNA/cDNA for LOC105374965 Gene

Expression for LOC105374965 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374965 Gene

Orthologs for LOC105374965 Gene

No data available for Orthologs and Evolution for LOC105374965 Gene

Paralogs for LOC105374965 Gene

No data available for Paralogs for LOC105374965 Gene

Variants for LOC105374965 Gene

Sequence variations from dbSNP and Humsavar for LOC105374965 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000007805 -- 20,071,994(-) A/T intron_variant
rs1000720547 -- 20,074,798(-) T/C non_coding_transcript_variant
rs1000919293 -- 20,070,157(-) C/T non_coding_transcript_variant
rs1001439997 -- 20,072,095(-) A/G intron_variant
rs1001711907 -- 20,077,308(-) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374965 Gene

Disorders for LOC105374965 Gene

No disorders were found for LOC105374965 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374965 Gene

Publications for LOC105374965 Gene

No publications were found for LOC105374965 Gene.

Products for LOC105374965 Gene

Sources for LOC105374965 Gene

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