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Aliases for LOC105374952 Gene

Subcategory (RNA class) for LOC105374952 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105374952 Gene

  • Uncharacterized LOC105374952 3
  • AL138724.1 5

External Ids for LOC105374952 Gene

Previous GeneCards Identifiers for LOC105374952 Gene

  • GC06U903172

Summaries for LOC105374952 Gene

GeneCards Summary for LOC105374952 Gene

LOC105374952 (Uncharacterized LOC105374952) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374952 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374952 Gene

Genomics for LOC105374952 Gene

GeneHancer (GH) Regulatory Elements for LOC105374952 Gene

Promoters and enhancers for LOC105374952 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I017701 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 574.1 -1.6 -1584 6.4 MLX ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC NUP153 LOC105374952 RNU6-190P FAM8A1 KDM1B
GH06I018259 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 25.4 +556.5 556507 6.2 HDGF PKNOX1 SMAD1 FOXA2 ARNT SIN3A FEZF1 DMAP1 ZNF2 IRF4 DEK NUP153 LOC105374952 IMPDH1P9 RNF144B GC06M018248 KDM1B
GH06I016758 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 12.3 -941.1 -941146 13.9 CLOCK ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 ZNF263 SP3 SSRP1 ATXN1 ENSG00000272341 NUP153 MYLIP LOC105374952 ENSG00000229931 LOC101928433 GC06P016871
GH06I017903 Enhancer 1.4 Ensembl ENCODE dbSUPER 15.9 +200.5 200543 6.4 HDGF PKNOX1 FOXA2 ARNT SIN3A YBX1 YY1 POLR2B ZNF766 CBX5 NUP153 KIF13A LOC105374952 DEK NHLRC1 GC06P017893 RPS12P12
GH06I017961 Enhancer 1.4 Ensembl ENCODE dbSUPER 15.9 +256.3 256347 2 HDGF PKNOX1 ARNT ZNF766 CBX5 E2F8 REST ZNF592 MEF2D SMARCA4 NUP153 LOC105374952 KIF13A GC06P017969 RPS12P12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374952 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374952 Gene

Genomic Locations for LOC105374952 Gene
chr6:17,706,257-17,711,027
(GRCh38/hg38)
Size:
4,771 bases
Orientation:
Plus strand
chr6:17,706,488-17,707,575
(GRCh37/hg19)

Genomic View for LOC105374952 Gene

Genes around LOC105374952 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374952 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374952 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374952 Gene

Proteins for LOC105374952 Gene

Post-translational modifications for LOC105374952 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374952 Gene

Domains & Families for LOC105374952 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374952 Gene

Function for LOC105374952 Gene

Phenotypes From GWAS Catalog for LOC105374952 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374952 Gene

Localization for LOC105374952 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374952 Gene

Pathways & Interactions for LOC105374952 Gene

SuperPathways for LOC105374952 Gene

No Data Available

Interacting Proteins for LOC105374952 Gene

Gene Ontology (GO) - Biological Process for LOC105374952 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374952 Gene

Drugs & Compounds for LOC105374952 Gene

No Compound Related Data Available

Transcripts for LOC105374952 Gene

mRNA/cDNA for LOC105374952 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374952 Gene

No ASD Table

Relevant External Links for LOC105374952 Gene

GeneLoc Exon Structure for
LOC105374952

Expression for LOC105374952 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374952 Gene

Orthologs for LOC105374952 Gene

Evolution for LOC105374952 Gene

ENSEMBL:
Gene Tree for LOC105374952 (if available)
TreeFam:
Gene Tree for LOC105374952 (if available)

No data available for Orthologs for LOC105374952 Gene

Paralogs for LOC105374952 Gene

No data available for Paralogs for LOC105374952 Gene

Variants for LOC105374952 Gene

Sequence variations from dbSNP and Humsavar for LOC105374952 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000637932 -- 17,709,094(+) A/T genic_downstream_transcript_variant, intron_variant
rs1001112359 -- 17,705,592(+) /C upstream_transcript_variant
rs1001145131 -- 17,705,464(+) A/G upstream_transcript_variant
rs1001583738 -- 17,709,878(+) C/T genic_downstream_transcript_variant, intron_variant
rs1002111043 -- 17,708,112(+) T/A genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374952 Gene

Disorders for LOC105374952 Gene

Additional Disease Information for LOC105374952

No disorders were found for LOC105374952 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC105374952 Gene

Publications for LOC105374952 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC105374952 Gene

Sources for LOC105374952 Gene

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