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Aliases for LOC105374949 Gene

Subcategory (RNA class) for LOC105374949 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC105374949 Gene

  • Uncharacterized LOC105374949 3

External Ids for LOC105374949 Gene

Previous GeneCards Identifiers for LOC105374949 Gene

  • GC06U902821

Summaries for LOC105374949 Gene

GeneCards Summary for LOC105374949 Gene

LOC105374949 (Uncharacterized LOC105374949) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374949 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374949 Gene

Genomics for LOC105374949 Gene

GeneHancer (GH) Regulatory Elements for LOC105374949 Gene

Promoters and enhancers for LOC105374949 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I015976 Enhancer 0.7 ENCODE 0.8 +3.7 3675 1.8 HDAC1 ETV1 CEBPG ZNF507 ZNF766 ZNF316 FOXK2 VEZF1 TRIM24 ATF7 MYLIP LOC105374949 ARPC3P5
GH06I015962 Enhancer 1 Ensembl ENCODE 0.4 +18.6 18578 1.5 HDGF MEIS2 RB1 JUN ZSCAN4 EBF1 BATF ETS1 RELA NFATC1 LOC105374949 ARPC3P5
GH06I015949 Enhancer 1.2 Ensembl ENCODE 0.3 +31.3 31253 0.9 PKNOX1 ATF1 FOXA2 ARID4B FEZF1 ZNF2 GLIS2 ZNF213 FOS KLF13 ARPC3P5 LOC105374949
GH06I015955 Enhancer 1 ENCODE 0.3 +24.5 24481 1.2 FOXA2 FEZF1 ZNF2 ZNF766 ZNF213 ZNF302 KLF13 REST ZNF592 MEF2D MYLIP ARPC3P5 LOC105374949
GH06I015968 Enhancer 0.6 ENCODE 0.4 +11.5 11489 1.7 ZNF449 CEBPB CEBPG DPF2 ZIC2 ATF4 CTBP1 MTA1 NR2C1 TRIM24 LOC105374949 ARPC3P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374949 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374949 Gene

Genomic Locations for LOC105374949 Gene
chr6:15,956,416-15,980,976
(GRCh38/hg38)
Size:
24,561 bases
Orientation:
Minus strand

Genomic View for LOC105374949 Gene

Genes around LOC105374949 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374949 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374949 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374949 Gene

Proteins for LOC105374949 Gene

Post-translational modifications for LOC105374949 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374949 Gene

Domains & Families for LOC105374949 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374949 Gene

Function for LOC105374949 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374949 Gene

Localization for LOC105374949 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374949 Gene

Pathways & Interactions for LOC105374949 Gene

SuperPathways for LOC105374949 Gene

No Data Available

Interacting Proteins for LOC105374949 Gene

Gene Ontology (GO) - Biological Process for LOC105374949 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374949 Gene

Drugs & Compounds for LOC105374949 Gene

No Compound Related Data Available

Transcripts for LOC105374949 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374949 Gene

No ASD Table

Relevant External Links for LOC105374949 Gene

GeneLoc Exon Structure for
LOC105374949

No data available for mRNA/cDNA for LOC105374949 Gene

Expression for LOC105374949 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374949 Gene

Orthologs for LOC105374949 Gene

No data available for Orthologs and Evolution for LOC105374949 Gene

Paralogs for LOC105374949 Gene

No data available for Paralogs for LOC105374949 Gene

Variants for LOC105374949 Gene

Sequence variations from dbSNP and Humsavar for LOC105374949 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000029935 -- 15,967,387(-) A/T intron_variant
rs1000374380 -- 15,973,265(-) C/T intron_variant
rs1000472842 -- 15,961,468(-) G/A intron_variant
rs1000483004 -- 15,979,380(-) G/A intron_variant
rs1000555101 -- 15,956,671(-) T/C genic_downstream_transcript_variant, non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374949 Gene

Disorders for LOC105374949 Gene

No disorders were found for LOC105374949 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374949 Gene

Publications for LOC105374949 Gene

No publications were found for LOC105374949 Gene.

Products for LOC105374949 Gene

Sources for LOC105374949 Gene

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