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Aliases for LOC105374935 Gene

Subcategory (RNA class) for LOC105374935 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374935 Gene

  • Uncharacterized LOC105374935 3

External Ids for LOC105374935 Gene

Previous GeneCards Identifiers for LOC105374935 Gene

  • GC06U903189

Summaries for LOC105374935 Gene

GeneCards Summary for LOC105374935 Gene

LOC105374935 (Uncharacterized LOC105374935) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374935 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374935 Gene

Genomics for LOC105374935 Gene

GeneHancer (GH) Regulatory Elements for LOC105374935 Gene

Promoters and enhancers for LOC105374935 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J012749 Enhancer 0.3 ENCODE 650.7 -1.1 -1146 0.2 NANOG LOC105374935 PHACTR1 LOC105374934 GC06M012692
GH06J012748 Enhancer 0.9 Ensembl ENCODE 0.7 -2.3 -2255 1.5 MXI1 KLF1 ZNF133 BACH1 SIN3A ZFHX2 POLR2A ZNF366 SCRT2 MAFK PHACTR1 LOC105374935 LOC105374934 GC06M012692
GH06J012760 Enhancer 0.4 ENCODE 0.4 -14.3 -14261 2.7 POLR2A CREB1 PHACTR1 LOC105374935 LOC105374934 GC06M012692
GH06J012729 Enhancer 0.4 FANTOM5 0.4 +17.7 17735 0.4 ATF4 GATA3 PHACTR1 LOC105374935 GC06M012692
GH06J012716 Promoter 0.5 EPDnew 0.3 +30.7 30710 0.1 PHACTR1 LOC105374935 GC06M012692
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC105374935 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374935 Gene

Genomic Locations for LOC105374935 Gene
chr6:12,695,221-12,747,458
(GRCh38/hg38)
Size:
52,238 bases
Orientation:
Minus strand

Genomic View for LOC105374935 Gene

Genes around LOC105374935 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374935 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374935 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374935 Gene

Proteins for LOC105374935 Gene

Post-translational modifications for LOC105374935 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374935 Gene

Domains & Families for LOC105374935 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374935 Gene

Function for LOC105374935 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374935 Gene

Localization for LOC105374935 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374935 Gene

Pathways & Interactions for LOC105374935 Gene

SuperPathways for LOC105374935 Gene

No Data Available

Interacting Proteins for LOC105374935 Gene

Gene Ontology (GO) - Biological Process for LOC105374935 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374935 Gene

Drugs & Compounds for LOC105374935 Gene

No Compound Related Data Available

Transcripts for LOC105374935 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374935 Gene

No ASD Table

Relevant External Links for LOC105374935 Gene

GeneLoc Exon Structure for
LOC105374935

No data available for mRNA/cDNA for LOC105374935 Gene

Expression for LOC105374935 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374935 Gene

Orthologs for LOC105374935 Gene

No data available for Orthologs and Evolution for LOC105374935 Gene

Paralogs for LOC105374935 Gene

No data available for Paralogs for LOC105374935 Gene

Variants for LOC105374935 Gene

Sequence variations from dbSNP and Humsavar for LOC105374935 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000052315 -- 12,747,416(-) C/T non_coding_transcript_variant
rs1000223425 -- 12,748,282(-) G/T upstream_transcript_variant
rs1000341776 -- 12,747,080(-) G/T intron_variant
rs1000595382 -- 12,748,039(-) T/C upstream_transcript_variant
rs1000687923 -- 12,749,311(-) T/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374935 Gene

Disorders for LOC105374935 Gene

No disorders were found for LOC105374935 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374935 Gene

Publications for LOC105374935 Gene

No publications were found for LOC105374935 Gene.

Products for LOC105374935 Gene

Sources for LOC105374935 Gene

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