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Aliases for LOC105374927 Gene

Subcategory (RNA class) for LOC105374927 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374927 Gene

  • Uncharacterized LOC105374927 3

External Ids for LOC105374927 Gene

Previous GeneCards Identifiers for LOC105374927 Gene

  • GC06U902836

Summaries for LOC105374927 Gene

GeneCards Summary for LOC105374927 Gene

LOC105374927 (Uncharacterized LOC105374927) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374927 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374927 Gene

Genomics for LOC105374927 Gene

GeneHancer (GH) Regulatory Elements for LOC105374927 Gene

Promoters and enhancers for LOC105374927 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J011391 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +1.7 1664 2.8 PKNOX1 SMAD1 FOXA2 MLX ARNT ARID4B DMAP1 YY1 SLC30A9 ZNF766 LOC105374927 NEDD9
GH06J011396 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.7 -3.5 -3529 3.1 FOXA2 MLX DMAP1 ZNF48 ETS1 YY1 ATF7 RXRA SP5 JUNB ELOVL2 LOC105374927 ENSG00000233656
GH06J011412 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.9 -19911 3.9 PKNOX1 ATF1 FOXA2 NEUROD1 FOS RUNX3 RXRA NFYC REST KAT8 NEDD9 TMEM170B ENSG00000233656 LOC105374927
GH06J011388 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.0 5039 1.8 PKNOX1 NFIB NEUROD1 YY1 ELK1 SCRT2 FOS RCOR1 CREM HCFC1 NEDD9 LOC105374927
GH06J011386 Enhancer 1 ENCODE dbSUPER 0.4 +7.4 7369 2 ELF3 STAT5A BATF IRF4 RARA ZNF366 ATF7 ETV6 BCLAF1 IKZF2 ENSG00000247925 LOC105374927 NEDD9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374927 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374927 Gene

Genomic Locations for LOC105374927 Gene
chr6:11,391,875-11,394,860
(GRCh38/hg38)
Size:
2,986 bases
Orientation:
Minus strand

Genomic View for LOC105374927 Gene

Genes around LOC105374927 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374927 Gene

Proteins for LOC105374927 Gene

Post-translational modifications for LOC105374927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374927 Gene

Domains & Families for LOC105374927 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374927 Gene

Function for LOC105374927 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374927 Gene

Localization for LOC105374927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374927 Gene

Pathways & Interactions for LOC105374927 Gene

SuperPathways for LOC105374927 Gene

No Data Available

Interacting Proteins for LOC105374927 Gene

Gene Ontology (GO) - Biological Process for LOC105374927 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374927 Gene

Drugs & Compounds for LOC105374927 Gene

No Compound Related Data Available

Transcripts for LOC105374927 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374927 Gene

No ASD Table

Relevant External Links for LOC105374927 Gene

GeneLoc Exon Structure for
LOC105374927

No data available for mRNA/cDNA for LOC105374927 Gene

Expression for LOC105374927 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374927 Gene

Orthologs for LOC105374927 Gene

No data available for Orthologs and Evolution for LOC105374927 Gene

Paralogs for LOC105374927 Gene

No data available for Paralogs for LOC105374927 Gene

Variants for LOC105374927 Gene

Sequence variations from dbSNP and Humsavar for LOC105374927 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000156014 -- 11,393,589(-) T/G intron_variant
rs1000264035 -- 11,394,324(-) A/G intron_variant
rs1000292903 -- 11,393,793(-) T/G intron_variant
rs1000364241 -- 11,394,605(-) C/G non_coding_transcript_variant
rs1000494442 -- 11,394,838(-) G/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374927 Gene

Disorders for LOC105374927 Gene

No disorders were found for LOC105374927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374927 Gene

Publications for LOC105374927 Gene

No publications were found for LOC105374927 Gene.

Products for LOC105374927 Gene

Sources for LOC105374927 Gene

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