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Aliases for LOC105374889 Gene

Subcategory (RNA class) for LOC105374889 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC105374889 Gene

  • Uncharacterized LOC105374889 3

External Ids for LOC105374889 Gene

Previous GeneCards Identifiers for LOC105374889 Gene

  • GC06U902995

Summaries for LOC105374889 Gene

GeneCards Summary for LOC105374889 Gene

LOC105374889 (Uncharacterized LOC105374889) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC105374889 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105374889 Gene

Genomics for LOC105374889 Gene

GeneHancer (GH) Regulatory Elements for LOC105374889 Gene

Promoters and enhancers for LOC105374889 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J003156 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.4 4432 11.6 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SSRP1 ZNF610 TUBB2A TUBB2B TUBB2BP1 PRPF4B PSMG4 C6orf201 RIPK1 BPHL LOC105374889 GC06P003150
GH06J003176 Enhancer 1.1 ENCODE dbSUPER 0.4 +19.1 19053 1.1 HDGF ATF1 BRCA1 FOS ATF7 NCOA1 ZNF592 NFIL3 ATF4 SMARCA4 TUBB2B TUBB2A ENSG00000228170 PSMG4 TUBB2BP1 GC06M003095 LOC105374889 GC06P003150
GH06J003171 Enhancer 0.9 ENCODE 0.4 +14.6 14609 1.6 HDAC1 HDGF PKNOX1 SMAD1 FOXA2 ARNT CHAMP1 ZNF335 POLR2B EGR1 TUBB2A TUBB2B PSMG4 BPHL TUBB2BP1 LOC105374889 GC06M003095 GC06P003150
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC105374889 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC105374889 Gene

Genomic Locations for LOC105374889 Gene
chr6:3,157,676-3,158,702
(GRCh38/hg38)
Size:
1,027 bases
Orientation:
Plus strand

Genomic View for LOC105374889 Gene

Genes around LOC105374889 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105374889 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105374889 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105374889 Gene

Proteins for LOC105374889 Gene

Post-translational modifications for LOC105374889 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105374889 Gene

Domains & Families for LOC105374889 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105374889 Gene

Function for LOC105374889 Gene

Phenotypes From GWAS Catalog for LOC105374889 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105374889 Gene

Localization for LOC105374889 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC105374889 Gene

Pathways & Interactions for LOC105374889 Gene

SuperPathways for LOC105374889 Gene

No Data Available

Interacting Proteins for LOC105374889 Gene

Gene Ontology (GO) - Biological Process for LOC105374889 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105374889 Gene

Drugs & Compounds for LOC105374889 Gene

No Compound Related Data Available

Transcripts for LOC105374889 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105374889 Gene

No ASD Table

Relevant External Links for LOC105374889 Gene

GeneLoc Exon Structure for
LOC105374889

No data available for mRNA/cDNA for LOC105374889 Gene

Expression for LOC105374889 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105374889 Gene

Orthologs for LOC105374889 Gene

No data available for Orthologs and Evolution for LOC105374889 Gene

Paralogs for LOC105374889 Gene

No data available for Paralogs for LOC105374889 Gene

Variants for LOC105374889 Gene

Sequence variations from dbSNP and Humsavar for LOC105374889 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1054305 likely-benign, not specified 3,155,686(+) G/A/C upstream_transcript_variant
rs115862064 benign, not specified 3,155,754(+) G/A upstream_transcript_variant
rs41300839 benign, not specified 3,155,713(+) G/C upstream_transcript_variant
rs1000300382 -- 3,157,176(+) C/T upstream_transcript_variant
rs1000587148 -- 3,156,991(+) C/T upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC105374889 Gene

Disorders for LOC105374889 Gene

No disorders were found for LOC105374889 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105374889 Gene

Publications for LOC105374889 Gene

No publications were found for LOC105374889 Gene.

Products for LOC105374889 Gene

Sources for LOC105374889 Gene

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